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Report for CCDS23448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23448.1 Public Mus musculus 9 Slco2a1 23 108 98 CCDS HistoryNCBI Gene:24059Re-query CCDS DB by CCDS ID:23448.1Re-query CCDS DB by GeneID:24059See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035148.12 ENSMUSP00000035148.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035148.12Link to Ensembl Protein Viewer:ENSMUSP00000035148.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035148Re-query CCDS DB by Protein ID:ENSMUSP00000035148
Original member Current member NCBI NM_033314.4 NP_201571.2 Accepted alive Link to Nucleotide Sequence:NM_033314.4Link to Protein Sequence:NP_201571.2Re-query CCDS DB by Nucleotide ID:NM_033314Re-query CCDS DB by Protein ID:NP_201571Link to BLAST:NP_201571.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_201571.2 643 Q9EPT5-1 643 100% 0 0

Chromosomal Locations for CCDS 23448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 103008620 103008715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103046685 103046822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103050144 103050306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103067825 103068052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103069145 103069243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103070228 103070364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103072559 103072634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103073148 103073312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103074376 103074565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103076924 103077089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103079449 103079612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103082329 103082393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103084818 103084941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103085759 103085879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1932 nt):
ATGGGGCTCCTGCCCAAGCCCGGAGCACGCCAGGGCAGCGGCACCTCCTCGGTCCCAGCCAGACGTTGCT
CCCGCTCGGTCTTCAACAACATTAAGGTCTTCGTGCTTTGTCATGGCCTCCTACAGCTCTGCCAGTTGCT
CTACAGTGCCTACTTCAAGAGCAGCCTCACCACTATCGAGAAGCGCTTTGGGCTCTCCAGTTCTTCCTCC
GGTCTCATCTCCAGTTTGAATGAGATCAGCAACGCTATCCTCATCATCTTCGTCAGCTACTTCGGCAGCC
GGGTGAACCGCCCACGGATGATCGGCATAGGGGGTCTCCTCCTGGCTGCAGGGGCCTTTGTCCTCACCCT
CCCACACTTCCTGTCAGAACCCTATCAGTACGCGTCGACAACTGCTGGAAACAGCAGCCACTTTCAGACC
GACCTCTGTCAGAAGCATTTGCCAGGCCTGCTCCCCAGTAAGTGCCACAGCACCGTGCCCGATACCCAGA
AGGAGACCAGCAGCATGTGGAGCCTGATGGTGGTCGCTCAGCTGCTGGCCGGCGTTGGGACGGTGCCCAT
TCAGCCATTTGGGATCTCCTATGTGGACGACTTTGCAGAGCCTACCAACTCGCCTCTGTATATCTCCATC
TTATTTGCTATCGCCGTGTTTGGGCCGGCTTTCGGGTACCTGCTGGGCTCAGTCATGCTGAGGATCTTCG
TGGACTACGGCAGAGTGGACACGGCTACAGTGAACCTGAGCCCAGGTGACCCTCGGTGGATCGGAGCCTG
GTGGCTGGGCCTGCTCATCTCCTCAGGCTTCTTGATCGTCACCTCTTTGCCCTTTTTCTTCTTTCCCCGA
GCGATGTCCAGAGGAGCAGAGAGGTCTGTTATCGCAGAGGAGACCATGAAGATGGAGGAAGACAAGTCAA
GAGGCTCCCTGATGGATTTCATTAAACGGTTCCCCCGCATCTTCCTGAGGCTGCTGATGAACCCACTCTT
CATGCTGGTGGTCCTGAGCCAGTGCACCTTCTCCTCAGTCATTGCTGGCCTCTCCACGTTCCTCAACAAG
TTCCTGGAGAAGCAGTACGATGCCTCGGCAGCCTATGCCAACTTACTCATTGGTGCTGTGAACCTTCCAG
CTGCGGCCTTGGGGATGCTGTTTGGAGGAATCCTCATGAAGCGTTTTGTTTTCCCTCTGCAAACCATCCC
CCGAGTAGCTGCCACCATCATGACCATCTCCATAATCCTATGTGCCCCTCTCTTCTTTATGGGATGTTCC
ACACCCGCCGTGGCTGAGGTCTACCCTCCCAGCACACCAAGTTCTATACATCCGCAGCCTCCCGCCTGCC
GCAGGGACTGCCTGTGCCCAGATTCCGTCTTCCACCCTGTCTGCGGAGACAATGGAGTCGAGTACCTCTC
CCCCTGCCATGCTGGCTGCAGCAGCCTCAACGTGAGCTCAGCAGCTTCTAAGCAACCAATCTATTTGAAC
TGTAGCTGTGTGACTGGAGGATCCGCATCGGCCAAGACAGGCTCCTGCCCTACATCCTGTGCACAGCTGC
TGCTCCCGTCCATCTTCCTCATCTCCTTTGTGGCACTCATTGCCTGCGTCTCCCACAACCCCCTCTACAT
GATGGTCCTACGTGTGGTGAACCAGGATGAAAAGTCGTTTGCCATTGGAGTACAGTTCTTGTTGATGCGT
TTGCTGGCCTGGCTGCCATCTCCATCCCTTTATGGCCTGCTCATCGACTCCTCCTGTATCCGGTGGAACT
ACCTATGCTCAGGGAGACGAGGGGCCTGTGCGTATTATGACAACGATGCTCTTCGAAACAGGTACCTGGG
CCTACAGGTAATCTACAAGGTCTTGGGCACACTGCTGCTCTTCTTCATCAGCTGGAGGGTGAAGAAGAAC
AGGGAATACAGTCTGCAGGAGAATGCCTCGGGCCTCATCTGA

Translation (643 aa):
MGLLPKPGARQGSGTSSVPARRCSRSVFNNIKVFVLCHGLLQLCQLLYSAYFKSSLTTIEKRFGLSSSSS
GLISSLNEISNAILIIFVSYFGSRVNRPRMIGIGGLLLAAGAFVLTLPHFLSEPYQYASTTAGNSSHFQT
DLCQKHLPGLLPSKCHSTVPDTQKETSSMWSLMVVAQLLAGVGTVPIQPFGISYVDDFAEPTNSPLYISI
LFAIAVFGPAFGYLLGSVMLRIFVDYGRVDTATVNLSPGDPRWIGAWWLGLLISSGFLIVTSLPFFFFPR
AMSRGAERSVIAEETMKMEEDKSRGSLMDFIKRFPRIFLRLLMNPLFMLVVLSQCTFSSVIAGLSTFLNK
FLEKQYDASAAYANLLIGAVNLPAAALGMLFGGILMKRFVFPLQTIPRVAATIMTISIILCAPLFFMGCS
TPAVAEVYPPSTPSSIHPQPPACRRDCLCPDSVFHPVCGDNGVEYLSPCHAGCSSLNVSSAASKQPIYLN
CSCVTGGSASAKTGSCPTSCAQLLLPSIFLISFVALIACVSHNPLYMMVLRVVNQDEKSFAIGVQFLLMR
LLAWLPSPSLYGLLIDSSCIRWNYLCSGRRGACAYYDNDALRNRYLGLQVIYKVLGTLLLFFISWRVKKN
REYSLQENASGLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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