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Report for CCDS23458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23458.1 Public Mus musculus 9 Acad11 23 108 98 CCDS HistoryNCBI Gene:102632Re-query CCDS DB by CCDS ID:23458.1Re-query CCDS DB by GeneID:102632See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047799.12 ENSMUSP00000043424.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047799.12Link to Ensembl Protein Viewer:ENSMUSP00000043424.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047799Re-query CCDS DB by Protein ID:ENSMUSP00000043424
Original member Current member NCBI NM_175324.4 NP_780533.2 Accepted alive Link to Nucleotide Sequence:NM_175324.4Link to Protein Sequence:NP_780533.2Re-query CCDS DB by Nucleotide ID:NM_175324Re-query CCDS DB by Protein ID:NP_780533Link to BLAST:NP_780533.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780533.2 779 Q80XL6 779 99.8716% 0 1

Chromosomal Locations for CCDS 23458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 104063761 104063903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104073622 104073721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104075817 104075942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104076330 104076491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104078563 104078727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104081231 104081372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104081698 104081819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104082791 104082897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104084161 104084287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104090258 104090335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104091592 104091730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104095521 104095628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104097354 104097452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104113462 104113528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104114453 104114538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104115278 104115349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104116165 104116319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104123047 104123163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104124018 104124127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104126582 104126696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGGAGACGGATGTCACCAGTGACACCGTGGAAGTGCTACCCCAGCACAAGTTCGACCTCAGGTCCCTGG
AG
GCCTACCTGAATCAGCACTTGCCGGGCTTTGGGTCAGATTCCCGGGCTGTGCTGACTGTTACTCAATA
C
AGATCAGGACAGTCAAACCCAACCTTCTTTCTCCAGAAAGGATCTCAAGCCTATGTTCTCAGGAAGAAA
CCA
CCCGGCTCTCTTCTTCCCAAAGCACATAAGATTGACAGAGAATTCAAGATCCAGAAAGCCTTGTTTT
CC
ATTGGATTTCCTGTTGCCAAGCCCCTGCTATACTGCAGAGATGCTTCAGTTATCGGAACGGAATTTTA
T
GTAATGGAACATGTGCAGGGTCGGATCTTTCGTGATTTTTCCATTCCTGGAGTTAGCTCAGCAGAACGT
GCT
GCTATATATGTGTCTGTGGCAGAAACCCTGGCATGGCTACATTCTCTGGATATACGCTCGCTGAAGC
TG
GACAAATACGGTACTGGAGTCGGGTACTGCAAAAGGCAGGTGTCCACCTGGACGAAGCAGTACCAGGC
C
TCAGCCCATCAGAGCATCCCTGCCATGGACCAGCTCTCCACGTGGCTGATGAAGAACTTGCCAGATAGT
GAC
AGTGAGGAGTGCCTGGTCCACGGAGACTTCAAGCTGGACAACATAGTTTTCCACCCCAAAGAGTGTC
GG
GTTATAGCAGTGTTGGACTGGGAGCTCTCGACCTTCGGCCATCCCTTGACGGACTTAGCCCATCTTTC
C
TTGTTTTACTATTGGCCCAGGACACTGCCCATGATAAACCGAGGCTCTCACATTCCAGAGAACACAGGA
ATA
CCGTTGATGGAAGAACTGATTTCAATATACTGCCACCGAAGGGGAATTGATCCTAATCTCCCTAACT
GG
AATTTCTTTATGGCCCTCTCATTTTTTAAATTGGCTGGAATATCACAGGGAGTCTATCGTAGATACCT
C
ATGGGAAATAACTCATCTGAGGATAGCTTCTTAACTGCCAATACTGTGCAACCTCTGGCAGAAACTGGA
TTG
CAGCTGTCAAAAAGAACTCTCAGGACTACACCACCACAGGCTGATGCTAAAAGCCAGCTGTTTGCAC
AG
AGCAGGAGAGGCCAGGAAGTTCTCACTAGAGTGAAGCAGTTCATGAAGCAGCATGTCTTTCCTGCTGA
G
AAGGAAGTAGCTGAATACTATGCTCAAAGTGGAAACTCAGCGGAAAAGTGGGGACACCCCTTAGTGATC
GAA
AAACTAAAGGAAATAGCCAAAGCAGAGGGCCTGTGGAATTTGTTCTTGCCAGCTGTGAGCGGTCTCA
GC
CAGGTGGACTATGCCTTGATTGCTGAAGAGACAGGAAAATGCTTTTTTGCTCCAGATGTTTTTAACTG
C
CAAGCACCAGACACAGGCAACATGGAGGTACTGCACCTGTATGGCAGCGAGCAGCAGAAGAAGCAGTGG
CTG
GAGCCTCTCCTGCGTGGCGATATCACCTCCGTCTTCTGTATGACAGAGCCCAACGTCTCATCAAGCG
AT
GCCACGAACATCGAATGCACCATCCAGAGAGATGGAGGTGGCTATATAGTTAACGGCAAGAAGTGGTG
G
AGCAGCGGAGCTGGGAATCCCAAGTGCAAAATCGCCATTGTTTTGGGAAGAACGGAGTCTCCCTCTGCA
TCC
AGACACAGACAGCACAGCATGATCCTCGTGCCGATGGACACACCTGGAGTGGAGTTAATAAGGCCTT
TG
TCGGTGTTCGGCTACATGGATAATATGCATGGCGGGCACTGGGAGGTCCATTTCAATCACGTGCGCGT
T
CCTGCCAGCAACTTAATACTAGGTGAAGGCAGGGGCTTTGAAATTTCCCAAGGCCGCCTTGGACCTGGA
AGA
ATCCACCACTGTATGAGAACCGTGGGTTTGGCAGAACGCATTCTGCAGATCATGTGTGACCGGGCCG
TG
CAGAGGGAGGCCTTCAAGAAGAAGCTCTACGAACATGAAGTCGTGGCTCACTGGATTGCTAAGAGCCG
T
ATAGCCATCGAGGAGATCCGCTTGCTGACCTTGAAAGCGGCTCACAGCATAGATACTCTGGGCAGTGCC
TCA
GCCAGGAAGGAGATTGCAATGATCAAAGTGGCTGCCCCCAAAGCTGTCTGCAAAATAGCTGACTGGG
CC
ATCCAGGTGCACGGAGGCGCGGGAGTTTCCCAGGATTACCCTCTGGCTAACATGTACGCCATCATACG
C
ACCCTGCGCTTGGCAGACGGCCCTGACGAAGTCCACCTCTCAGCGATCGCCAAGATGGAGCTTCAGGAC
CAA
GCCAGACGGTTGACAGCCAGGATGTGA


Translation (779 aa):
METDVTSDTVEVLPQHKFDLRSLEAYLNQHLPGFGSDSRAVLTVTQYRSGQSNPTFFLQKGSQAYVLRKK
P
PGSLLPKAHK
IDREFKIQKALFSIGFPVAKPLLYCRDASVIGTEFYVMEHVQGRIFRDFSIPGVSSAER
A
AIYVSVAETLAWLHSLDIRSLKLDKYGTGVGYCKRQ
VSTWTKQYQASAHQSIPAMDQLSTWLMKNLPDS
D
SEECLVHGDFKLDNIVFHPKE
CRVIAVLDWELSTFGHPLTDLAHLSLFYYWPRTLPMINRGSHIPENTG
I
PLMEELISIYCHRRGIDPNLPNWNFFMALSFFKLAGISQ
GVYRRYLMGNNSSEDSFLTANTVQPLAETG
L
QLSK
RTLRTTPPQADAKSQLFAQSRRGQEVLTRVKQFMKQHVFPAEKEVAEYYAQSGNSAEKWGHPLVI
E
KLK
EIAKAEGLWNLFLPAVSGLSQVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEQQKKQW
L
EPLLRGDITSVFCMT
EPNVSSSDATNIECTIQRDGGGYIVNGKKWWSSGAGNPKCKIAIVLGRTESPSA
S
RHRQHSMILVPMDTPGVELIRPLSVFGYMDNMHGGHWEVHFNHVRVPASNLILGEGRGFEISQGRLGPG
R
IHHCMRTVGLAERILQIMCDRAVQREAFKKKLYEH
EVVAHWIAKSRIAIEEIRLLTLKAAHSIDTLGSA
S
ARKE
IAMIKVAAPKAVCKIADWAIQVHGGAGVSQDYPLANMYAIIRTLRLADGPDEVHLSAIAKMELQD
Q
ARRLTARM




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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