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Report for CCDS23503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23503.1 Public Mus musculus 9 Slc38a3 23 108 98 CCDS HistoryNCBI Gene:76257Re-query CCDS DB by CCDS ID:23503.1Re-query CCDS DB by GeneID:76257See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23503.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010208.13 ENSMUSP00000010208.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010208.13Link to Ensembl Protein Viewer:ENSMUSP00000010208.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000010208Re-query CCDS DB by Protein ID:ENSMUSP00000010208
Original member Current member EBI ENSMUST00000167868.7 ENSMUSP00000130414.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167868.7Link to Ensembl Protein Viewer:ENSMUSP00000130414.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167868Re-query CCDS DB by Protein ID:ENSMUSP00000130414
Original member Current member EBI ENSMUST00000177567.7 ENSMUSP00000137561.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177567.7Link to Ensembl Protein Viewer:ENSMUSP00000137561.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177567Re-query CCDS DB by Protein ID:ENSMUSP00000137561
Original member Current member EBI ENSMUST00000193932.5 ENSMUSP00000142087.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193932.5Link to Ensembl Protein Viewer:ENSMUSP00000142087.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193932Re-query CCDS DB by Protein ID:ENSMUSP00000142087
Original member Current member NCBI NM_001199217.1 NP_001186146.1 Accepted alive Link to Nucleotide Sequence:NM_001199217.1Link to Protein Sequence:NP_001186146.1Re-query CCDS DB by Nucleotide ID:NM_001199217Re-query CCDS DB by Protein ID:NP_001186146Link to BLAST:NP_001186146.1
Original member Current member NCBI NM_001199218.1 NP_001186147.1 Accepted alive Link to Nucleotide Sequence:NM_001199218.1Link to Protein Sequence:NP_001186147.1Re-query CCDS DB by Nucleotide ID:NM_001199218Re-query CCDS DB by Protein ID:NP_001186147Link to BLAST:NP_001186147.1
Original member Current member NCBI NM_023805.3 NP_076294.2 Accepted alive Link to Nucleotide Sequence:NM_023805.3Link to Protein Sequence:NP_076294.2Re-query CCDS DB by Nucleotide ID:NM_023805Re-query CCDS DB by Protein ID:NP_076294Link to BLAST:NP_076294.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186146.1 505 Q9DCP2 505 100% 0 0
NP_001186147.1 505 Q9DCP2 505 100% 0 0
NP_076294.2 505 Q9DCP2 505 100% 0 0

Chromosomal Locations for CCDS 23503.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107651934 107652038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107652129 107652232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107655023 107655167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107655256 107655380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107655585 107655685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107655935 107656014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107656100 107656270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107656456 107656514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107656595 107656677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107657630 107657711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107657810 107657902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107657994 107658067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107658637 107658752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107658932 107659010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107659095 107659195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGAGATACCCCGACAGACAGAGATGGTGGAGCTGGTGCCCAATGGCAAACACTTGGAGGGGCTTCTAC
CAGTGGGCGTGCCTACAACAGACACCCAGAGGACTGAAGACACCCAACACTGTGGAGAGGGCAAGGGCTT
CCTTCAGAAGAGTCCCAGCAAGGAGCCACACTTCACCGATTTCGAGGGGAAGACATCATTTGGGATGTCA
GTGTTCAATCTCAGCAACGCCATCATGGGCAGTGGAATTCTGGGGCTCGCCTACGCCATGGCCAATACGG
GCATCATCCTTTTCCTGTTCCTGCTTACAGCGGTCGCCCTGTTGTCTAGCTATTCCATCCACCTGCTCCT
CAAGTCTTCGGGGATTGTGGGCATCCGTGCCTACGAGCAGTTGGGCTACCGTGCCTTTGGGACCCCGGGG
AAGCTGGCAGCAGCCCTGGCCATTACGCTTCAGAACATTGGAGCCATGTCCAGCTACCTATACATCATCA
AGTCTGAATTGCCTCTTGTCATACAGACCTTCCTGAATCTGGAGAAGCCGGCCTCGGTGTGGTACATGGA
TGGCAACTACCTTGTGATCCTGGTTTCTGTCACCATCATTCTGCCCCTAGCACTGATGCGACAGCTCGGC
TACCTGGGTTACTCCAGTGGCTTCTCTCTCAGCTGCATGGTGTTCTTCTTGATCGCAGTCATCTATAAGA
AGTTCCAAGTTCCTTGCCCATTGGCACACAACCTGGCCAATGCCACCGGCAACTTCAGCCACATGGTGGT
GGCAGAGGAGAAGGCACAGCTGCAGGGCGAGCCTGACACTGCTGCTGAGGCCTTCTGTACCCCAAGCTAC
TTCACCCTCAACTCACAGACAGCATACACCATCCCCATCATGGCTTTCGCCTTCGTCTGCCACCCTGAGG
TGCTGCCCATATATACAGAGCTCAAGGACCCCTCCAAGAGGAAGATGCAGCACATCTCCAACCTGTCCAT
TGCTGTCATGTATGTCATGTACTTCCTGGCCGCCCTCTTCGGCTACCTCACCTTCTACGACGGGGTGGAG
TCGGAGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTGATGTGCTGATCTTGTGTGTGCGAGTGGCCG
TGCTGATAGCGGTCACACTTACAGTTCCGATTGTTCTGTTCCCGGTACGACGTGCTATCCAGCAGATGCT
GTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCACTGGCCTGCTTACGTGCATCAAT
CTGCTGGTTATCTTCGCCCCCAACATCTTGGGCATATTTGGGATCATTGGTGCCACATCTGCTCCGTGCC
TCATCTTCATCTTCCCTGCCATCTTCTACTTCCGAATCATGCCCACTGACAAGGAGCCTGCAAGATCCAC
CCCTAAAATCCTGGCCCTTTGTTTCGCTGCGGTTGGCTTCCTGCTGATGACCATGAGCCTGAGTTTCATC
ATCATTGACTGGGTCTCTGGGACCAGCCAGCATGGAGGAAACCATTAG

Translation (505 aa):
MEIPRQTEMVELVPNGKHLEGLLPVGVPTTDTQRTEDTQHCGEGKGFLQKSPSKEPHFTDFEGKTSFGMS
VFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPG
KLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEKPASVWYMDGNYLVILVSVTIILPLALMRQLG
YLGYSSGFSLSCMVFFLIAVIYKKFQVPCPLAHNLANATGNFSHMVVAEEKAQLQGEPDTAAEAFCTPSY
FTLNSQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVE
SELLHTYSKVDPFDVLILCVRVAVLIAVTLTVPIVLFPVRRAIQQMLFQNQEFSWLRHVLIATGLLTCIN
LLVIFAPNILGIFGIIGATSAPCLIFIFPAIFYFRIMPTDKEPARSTPKILALCFAAVGFLLMTMSLSFI
IIDWVSGTSQHGGNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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