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Report for CCDS23514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23514.1 Public Mus musculus 9 Ip6k1 23 108 98 CCDS HistoryNCBI Gene:27399Re-query CCDS DB by CCDS ID:23514.1Re-query CCDS DB by GeneID:27399See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23514.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035214.10 ENSMUSP00000035214.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035214.10Link to Ensembl Protein Viewer:ENSMUSP00000035214.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035214Re-query CCDS DB by Protein ID:ENSMUSP00000035214
Original member Current member NCBI NM_013785.2 NP_038813.2 Accepted alive Link to Nucleotide Sequence:NM_013785.2Link to Protein Sequence:NP_038813.2Re-query CCDS DB by Nucleotide ID:NM_013785Re-query CCDS DB by Protein ID:NP_038813Link to BLAST:NP_038813.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038813.2 433 Q6PD10 433 100% 0 0

Chromosomal Locations for CCDS 23514.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108024228 108024450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108031999 108032209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108040905 108041086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108044725 108044900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108045463 108045972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGTGTGTTTGTCAAACCATGGAAGTGGGGCAGTATGGCAAGAACGCAAGTCGGGCCGGAGACCGAGGAG
TCCTCCTGGAGCCCTTCATCCATCAGGTGGGCGGGCACAGCAGCATGATGCGGTACGACGACCACACTGT
GTGCAAACCTCTCATCTCCCGGGAACAGCGCTTCTACGAGTCACTCCCTCCCGAAATGAAGGAATTCACC
CCAGAGTACAAAGGCGTGGTTTCTGTCTGTTTTGAGGGAGACAGTGATGGTTACATCAACTTGGTAGCCT
ATCCTTATGTGGAGAGTGAAACTGTAGAGCAAGATGACACACCAGAGCGGGAGCAACCTCGGCGCAAACA
CTCCCGCCGGAGCCTGCATCGGTCTGGCAGTGGTAGTGACCACAAGGAGGAGAAAGCCAGCCTGTCCTTT
GAGACCTCTGAGAGCTCCCAGGAGGCAAAGAGTCCAAAGGTGGAACTGCACAGCCACTCAGATGTCCCTT
TCCAGATGCTAGACAGCAATAGCGGTCTGAGCTCCGAGAAGATCAGCTACAACCCCTGGAGCCTGCGCTG
CCACAAGCAGCAGCTGAGCCGCATGCGCTCCGAGTCCAAGGACCGAAAACTCTACAAGTTCCTCCTGCTT
GAGAACGTGGTACACCACTTCAAGTACCCCTGTGTGCTGGACTTGAAGATGGGTACCCGGCAGCATGGCG
ATGATGCTTCAGCTGAAAAGGCTGCCCGGCAGATGAGGAAGTGTGAGCAGAGCACGTCGGCCACGCTGGG
GGTCAGGGTCTGTGGCATGCAGGTGTACCAGCTGGACACAGGTCATTACCTCTGCAGGAATAAGTACTAT
GGCCGTGGACTCTCCATCGAGGGCTTCCGCAATGCGCTCTATCAGTACCTGCACAATGGCTTGGACCTTC
GACGTGACCTTTTTGAGCCAATCCTGAGCAAACTGCGGGGCCTCAAAGCCGTACTGGAGCGGCAGGCCTC
CTACCGCTTCTACTCCAGCTCCCTGCTTGTCATCTATGATGGCAAGGAGTGCCGGTCTGAGCTACGTCTC
AAGCACGTGGACATGGGGCTCCCTGAGGTGCCACCACCCTGTGGCCCCAGCACCAGTCCTAGCAGCACCA
GTCTTGAGGCTGGCCCCTCTTCTCCGCCCAAGGTGGATGTTCGCATGATTGACTTTGCACACAGCACATT
CAAGGGCTTCCGGGATGACCCCACTGTTCACGATGGGCCAGACAGAGGCTATGTGTTTGGCTTGGAGAAT
CTTATCAGCATCATGGAGCAGATGCGGGATGAGAACCAGTAG

Translation (433 aa):
MCVCQTMEVGQYGKNASRAGDRGVLLEPFIHQVGGHSSMMRYDDHTVCKPLISREQRFYESLPPEMKEFT
PEYKGVVSVCFEGDSDGYINLVAYPYVESETVEQDDTPEREQPRRKHSRRSLHRSGSGSDHKEEKASLSF
ETSESSQEAKSPKVELHSHSDVPFQMLDSNSGLSSEKISYNPWSLRCHKQQLSRMRSESKDRKLYKFLLL
ENVVHHFKYPCVLDLKMGTRQHGDDASAEKAARQMRKCEQSTSATLGVRVCGMQVYQLDTGHYLCRNKYY
GRGLSIEGFRNALYQYLHNGLDLRRDLFEPILSKLRGLKAVLERQASYRFYSSSLLVIYDGKECRSELRL
KHVDMGLPEVPPPCGPSTSPSSTSLEAGPSSPPKVDVRMIDFAHSTFKGFRDDPTVHDGPDRGYVFGLEN
LISIMEQMRDENQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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