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Report for CCDS23541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23541.1 Public Mus musculus 9 Pfkfb4 23 108 98 CCDS HistoryNCBI Gene:270198Re-query CCDS DB by CCDS ID:23541.1Re-query CCDS DB by GeneID:270198See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23541.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000198140.4 ENSMUSP00000142378.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198140.4Link to Ensembl Protein Viewer:ENSMUSP00000142378.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198140Re-query CCDS DB by Protein ID:ENSMUSP00000142378
Original member Current member NCBI NM_173019.5 NP_766607.3 Accepted alive Link to Nucleotide Sequence:NM_173019.5Link to Protein Sequence:NP_766607.3Re-query CCDS DB by Nucleotide ID:NM_173019Re-query CCDS DB by Protein ID:NP_766607Link to BLAST:NP_766607.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766607.3 469 Q6DTY7-1 469 100% 0 0

Chromosomal Locations for CCDS 23541.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108992016 108992112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108998859 108998975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108999113 108999209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109005572 109005638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109007284 109007358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109007692 109007748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109008349 109008470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109010449 109010656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109011158 109011304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109025047 109025151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109027520 109027649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109027745 109027807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109028894 109028958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109030329 109030388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGCGTCTCCACGGGAACTGACCCAGAATCCCCTGAAGAAGATCTGGATGCCGTACAGCAATGGCAGGC
CCGCTCTGCACGCCAGCCAGCGTGGTGTCTGCATGACTAACTGTCCGACACTCATTGTCATGGTGGGCCT
GCCAGCCCGGGGCAAGACCTACATTTCTAAGAAGCTGACGCGGTACCTCAACTGGATTGGCGTGCCTACT
CGGGAATTCAACGTTGGTCAGTATCGCCGGGACATAGTCAAGACGTACAAATCTTTTGAGTTTTTCCTCC
CAGACAATGAAGAAGGCCTGAAAATCAGGAAGCAGTGTGCCTTAGCAGCCCTCAGTGATGTCCGGAAGTT
CCTCAGTGAGGAGGGGGGACATGTGGCGGTTTTTGATGCAACCAATACGACCCGAGAGCGGAGAGCGATG
ATCTTTAACTTTGGAGAACAGAATGGCTACAAGACCTTCTTTGTTGAATCTATCTGTGTGGATCCTGAGG
TTGTTGCTGCCAACATCGTGCAAGTGAAGCTGGGCAGCCCTGACTATGTCAACCGGGACAGCGACGAAGC
CACCGAAGACTTCATGAGGCGCATTGAATGCTATGAAAACTCATATGAGTCGCTGGATGAAGACCTGGAC
AGGGATCTGTCCTACATCAAGATCATGGACGTGGGCCAGAGCTATGTGGTGAACCGTGTTGCTGATCACA
TCCAGAGTCGCATCGTTTATTACCTCATGAACATCCATGTGACACCCCGCTCCATCTACCTCTGCCGGCA
TGGGGAGAGCGAGCTAAACCTCAAGGGCCGGATTGGTGGGGATCCTGGACTGTCCCCCCGGGGCCGGGAG
TTTTCCAAGCATCTGGCCCAGTTCATCAGTGACCAGAACATTAAGGATCTGAAGGTCTGGACGAGCCAGA
TGAAGAGGACGATCCAGACAGCCGAGGCGCTGAGCGTCCCTTATGAGCAGTGGAAGGTCCTCAACGAGAT
CGATGCGGGCGTCTGTGAGGAAATGACCTACGAAGAAATCCAGGATCACTACCCGCTGGAGTTTGCCCTG
CGGGATCAGGACAAGTACCGGTACCGGTACCCGAAGGGTGAGTCCTATGAAGACCTGGTGCAGCGGCTGG
AGCCCGTCATCATGGAACTGGAGAGGCAGGAGAATGTGTTGGTCATTTGCCACCAGGCTGTCATGCGCTG
CCTCCTGGCCTACTTCCTTGACAAGGCAGCTGAAGAGCTGCCCTACCTCAAATGCCCCTTGCACACAGTC
CTGAAGCTCACACCCGTGGCTTACGGTTGTAAAGTGGAGTCCATATTCCTGAACGTGGCAGCTGTGAACA
CTCACCGAGACAGACCTCAGAATGTAGACATATCCAGGCCTTCAGAGGAAGCCCTTGTCACAGTCCCTGC
TCACCAGTGA

Translation (469 aa):
MASPRELTQNPLKKIWMPYSNGRPALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYLNWIGVPT
REFNVGQYRRDIVKTYKSFEFFLPDNEEGLKIRKQCALAALSDVRKFLSEEGGHVAVFDATNTTRERRAM
IFNFGEQNGYKTFFVESICVDPEVVAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEDLD
RDLSYIKIMDVGQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGGDPGLSPRGRE
FSKHLAQFISDQNIKDLKVWTSQMKRTIQTAEALSVPYEQWKVLNEIDAGVCEEMTYEEIQDHYPLEFAL
RDQDKYRYRYPKGESYEDLVQRLEPVIMELERQENVLVICHQAVMRCLLAYFLDKAAEELPYLKCPLHTV
LKLTPVAYGCKVESIFLNVAAVNTHRDRPQNVDISRPSEEALVTVPAHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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