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Report for CCDS23734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23734.1 Public Mus musculus 10 Vnn3 23 108 98 CCDS HistoryNCBI Gene:26464Re-query CCDS DB by CCDS ID:23734.1Re-query CCDS DB by GeneID:26464See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23734.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020190.7 ENSMUSP00000020190.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020190.7Link to Ensembl Protein Viewer:ENSMUSP00000020190.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020190Re-query CCDS DB by Protein ID:ENSMUSP00000020190
Original member Current member NCBI NM_011979.2 NP_036109.3 Accepted alive Link to Nucleotide Sequence:NM_011979.2Link to Protein Sequence:NP_036109.3Re-query CCDS DB by Nucleotide ID:NM_011979Re-query CCDS DB by Protein ID:NP_036109Link to BLAST:NP_036109.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036109.3 500 Q9QZ25 500 100% 0 0

Chromosomal Locations for CCDS 23734.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 23851584 23851796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23851907 23852037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23856198 23856390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23864338 23864629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23865628 23865998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23867094 23867267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23869529 23869657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGCTTCATTACATTTTCCTCAATGGGCAGTGAGTTTTGTCTTCTTTGCCCAGGCTGTGGGTTCAATGG
ACACTTTTATTGCTGCTGTGTATGAACATGCTGTTATACTGCCAAACAAAACTGAAAGTCCTGTTTCCAC
TGAAGAGGCTTTGCTCCTGATAAACAAGAACATAGACATTTTGGAGAGTGCAATCAAGCTGGCAGCCAGA
CAGGGTGCACATATCATTGTGACGCCAGAAGATGGAATCTATGGTTGGATCTTCACCAGGGAGACCATTT
ACCCCTACCTAGAGGATATACCAGACCCTGAAGTGAACTGGATTCCCTGTAGAGACCCTAGGAGGTTTGG
CTACACACCAGTACAGGAGAGACTGAGCTGCCTTGCCAAGGAGAACTCTATCTATATTATGGCAAATATT
GGGGACAAGAAGCCATGCAATGCTACTGATCCTCATTGTCCCCCGGATGGCCGTTACCAATATAATACCA
ATGTGGTCTTCGATTCTAAGGGTAGGCTAACAGCCCGCTACCATAAGTACAATCTTTTTGAACCAGAGAT
TCAGTTTGATTTCCCCAAAGATTCAGAGCTGGTGACCTTTGACACCCCGTTTGGGAAGTTTGGCATCTTC
ACTTGCTTTGACATTTTCTCTTATGACCCAGCTGTGGTGGTTGTGAAGGACACCCAGGTCGACAGTGTTC
TCTTACCCACGGCGTGGTACAACACCCTGCCCCTGCTTTCAGCAGTTCCATTCCATTCGGTGTGGGCCAG
AGCCATGGGGGTCAACGTGCTTGCTGCAAACACCCACAACACCAGCATGCATATGACAGGGAGTGGAATC
TACAGCCCGGAAGCTGTCCGAGTGTACCACTATGACATGGAGACAGAGAGTGGCCAACTGCTGCTTTCAG
AGCTGAGGTCTCGGCCTCGCCAGCACGCCACCCCTGCAGAGGTTAACTGGAGCGCTTATGCCAGGACTGT
GAAGCCGTTCTCATCGGGGCAGGCAGACTTCCCAGGAAAGATTTATTTTGACGAATTTAGCTTCACCAAG
CTTACAGGAAGTGCTGGCAATTACACAGTTTGCCAAAAGGACCTGTGCTGTCACCTGACTTACAAGATGT
CTGAGAGCCGAATGGACGAGGTGTATGTTCTGGGTGCCTTTGATGGACTCCATACAGTGGAAGGCCAGTA
TTACCTACAGATATGTACATTGCTGAAGTGTCAAACCACCAACTCGAGAACTTGTGGGGAACCCGTGGGG
TCAGCTTTTACAAAGTTTGAAGAATTCTCTCTCAGTGGCACCTTTCGGACAAAATATGTTTTCCCACAGA
TCGTGCTAAGTGGGAGTCAACTTGCCCTGGAAAGATATTATGAAGTCTCAAGAGATGGACGTCTGAGGAG
TCGAGGTGGAGCCCCTTTGCCTATCTTAGTGATGGCCCTGTATGGAAGAGTGTTTGAGAGAGACCCTCCG
CGCTTAGGGCAGGGACCTGGGAAGCTGCAGTGA

Translation (500 aa):
MASLHFPQWAVSFVFFAQAVGSMDTFIAAVYEHAVILPNKTESPVSTEEALLLINKNIDILESAIKLAAR
QGAHIIVTPEDGIYGWIFTRETIYPYLEDIPDPEVNWIPCRDPRRFGYTPVQERLSCLAKENSIYIMANI
GDKKPCNATDPHCPPDGRYQYNTNVVFDSKGRLTARYHKYNLFEPEIQFDFPKDSELVTFDTPFGKFGIF
TCFDIFSYDPAVVVVKDTQVDSVLLPTAWYNTLPLLSAVPFHSVWARAMGVNVLAANTHNTSMHMTGSGI
YSPEAVRVYHYDMETESGQLLLSELRSRPRQHATPAEVNWSAYARTVKPFSSGQADFPGKIYFDEFSFTK
LTGSAGNYTVCQKDLCCHLTYKMSESRMDEVYVLGAFDGLHTVEGQYYLQICTLLKCQTTNSRTCGEPVG
SAFTKFEEFSLSGTFRTKYVFPQIVLSGSQLALERYYEVSRDGRLRSRGGAPLPILVMALYGRVFERDPP
RLGQGPGKLQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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