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Report for CCDS23848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23848.1 Public Mus musculus 10 Man1a 23 108 98 CCDS HistoryNCBI Gene:17155Re-query CCDS DB by CCDS ID:23848.1Re-query CCDS DB by GeneID:17155See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003843.15 ENSMUSP00000003843.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003843.15Link to Ensembl Protein Viewer:ENSMUSP00000003843.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003843Re-query CCDS DB by Protein ID:ENSMUSP00000003843
Original member Current member EBI ENSMUST00000105470.8 ENSMUSP00000101110.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105470.8Link to Ensembl Protein Viewer:ENSMUSP00000101110.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105470Re-query CCDS DB by Protein ID:ENSMUSP00000101110
Original member Current member NCBI NM_008548.5 NP_032574.1 Accepted alive Link to Nucleotide Sequence:NM_008548.5Link to Protein Sequence:NP_032574.1Re-query CCDS DB by Nucleotide ID:NM_008548Re-query CCDS DB by Protein ID:NP_032574Link to BLAST:NP_032574.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032574.1 655 P45700 655 100% 0 0

Chromosomal Locations for CCDS 23848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 53907437 53907563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53907943 53908058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53919158 53919330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53920043 53920262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53925430 53925545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53933492 53933585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53934889 53935012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53977023 53977117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 54014415 54014495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 54025714 54025829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 54030698 54030794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 54074416 54075024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGCCCGTGGGGGGCCTGTTGCCGCTCTTCAGTAGCCCTGGGGGCGGCGGCCTGGGCAGTGGCCTGGGCG
GGGGGCTTGGCGGCGGGAGGAAGGGGTCTGGCCCCGCTGCCTTCCGCCTCACCGAGAAGTTCGTGCTGCT
GCTGGTGTTCAGCGCCTTCATCACGCTCTGCTTCGGGGCAATCTTCTTCCTGCCTGACTCCTCCAAGCTG
CTCAGCGGGGTCCTGTTCCACTCCAACCCTGCCTTGCAGCCGCCGGCGGAGCACAAGCCCGGGCTCGGGG
CGCGTGCGGAGGATGCCGCCGAGGGGAGAGTCCGGCACCGCGAGGAAGGCGCGCCTGGGGACCCTGGAGC
TGGACTGGAAGACAACTTAGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAGGGAAGCCAAGGAGACC
CTGCAGAAGCTGCCGGAGGAGATCCAAAGAGACATTCTGCTGGAGAAGGAAAAGGTGGCCCAGGACCAGC
TGCGTGACAAGGATCTGTTTAGGGGCTTGCCCAAGGTGGACTTCCTGCCCCCCGTCGGGGTAGAGAACCG
GGAGCCCGCTGACGCCACCATCCGTGAGAAGAGGGCAAAGATCAAAGAGATGATGACCCATGCTTGGAAT
AATTATAAACGCTATGCGTGGGGCTTGAACGAACTGAAACCTATATCAAAAGAAGGCCATTCAAGCAGTT
TGTTTGGCAACATCAAAGGAGCTACAATAGTAGATGCCCTGGATACCCTTTTCATTATGGGCATGAAGAC
TGAATTTCAAGAAGCTAAATCGTGGATTAAAAAATATTTAGATTTTAATGTGAATGCTGAAGTTTCTGTT
TTTGAAGTCAACATACGCTTCGTCGGTGGACTGCTGTCAGCCTACTATTTGTCCGGAGAGGAGATATTTC
GAAAGAAAGCAGTGGAACTTGGGGTAAAATTGCTACCTGCATTTCATACTCCCTCTGGAATACCTTGGGC
ATTGCTGAATATGAAAAGTGGGATCGGGCGGAACTGGCCCTGGGCCTCTGGAGGCAGCAGTATCCTGGCC
GAATTTGGAACTCTGCATTTAGAGTTTATGCACTTGTCCCACTTATCAGGAGACCCAGTCTTTGCCGAAA
AGGTTATGAAAATTCGAACAGTGTTGAACAAACTGGACAAACCAGAAGGCCTTTATCCTAACTATCTGAA
CCCCAGTAGTGGACAGTGGGGTCAACATCATGTGTCGGTTGGAGGACTTGGAGACAGCTTTTATGAATAT
TTGCTTAAGGCGTGGTTAATGTCTGACAAGACAGATCTCGAAGCCAAGAAGATGTATTTTGATGCTGTTC
AGGCCATCGAGACTCACTTGATCCGCAAGTCAAGTGGGGGACTAACGTACATCGCAGAGTGGAAGGGGGG
CCTCCTGGAACACAAGATGGGCCACCTGACGTGCTTTGCAGGAGGCATGTTTGCACTTGGGGCAGATGGA
GCTCCGGAAGCCCGGGCCCAACACTACCTTGAACTCGGAGCTGAAATTGCCCGCACTTGTCATGAATCTT
ATAATCGTACATATGTGAAGTTGGGACCGGAAGCGTTTCGATTTGATGGCGGTGTGGAAGCTATTGCCAC
GAGGCAAAATGAAAAGTATTACATCTTACGGCCCGAGGTCATCGAGACATACATGTACATGTGGCGACTG
ACTCACGACCCCAAGTACAGGACCTGGGCCTGGGAAGCCGTGGAGGCTCTAGAAAGTCACTGCAGAGTGA
ACGGAGGCTACTCAGGCTTACGGGATGTTTACATTGCCCGTGAGAGTTATGACGATGTCCAGCAAAGTTT
CTTCCTGGCAGAGACACTGAAGTATTTGTACTTGATATTTTCCGATGATGACCTTCTTCCACTAGAACAC
TGGATCTTCAACACCGAGGCTCATCCTTTCCCTATACTCCGTGAACAGAAGAAGGAAATTGATGGCAAAG
AGAAATGA

Translation (655 aa):
MPVGGLLPLFSSPGGGGLGSGLGGGLGGGRKGSGPAAFRLTEKFVLLLVFSAFITLCFGAIFFLPDSSKL
LSGVLFHSNPALQPPAEHKPGLGARAEDAAEGRVRHREEGAPGDPGAGLEDNLARIRENHERALREAKET
LQKLPEEIQRDILLEKEKVAQDQLRDKDLFRGLPKVDFLPPVGVENREPADATIREKRAKIKEMMTHAWN
NYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTLFIMGMKTEFQEAKSWIKKYLDFNVNAEVSV
FEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIGRNWPWASGGSSILA
EFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEY
LLKAWLMSDKTDLEAKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCFAGGMFALGADG
APEARAQHYLELGAEIARTCHESYNRTYVKLGPEAFRFDGGVEAIATRQNEKYYILRPEVIETYMYMWRL
THDPKYRTWAWEAVEALESHCRVNGGYSGLRDVYIARESYDDVQQSFFLAETLKYLYLIFSDDDLLPLEH
WIFNTEAHPFPILREQKKEIDGKEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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