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Report for CCDS24224.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24224.2 Public Mus musculus 10 Cyp27b1 23 108 98 CCDS HistoryNCBI Gene:13115Re-query CCDS DB by CCDS ID:24224.2Re-query CCDS DB by GeneID:13115See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 24224.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24224.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165764.7 ENSMUSP00000130005.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165764.7Link to Ensembl Protein Viewer:ENSMUSP00000130005.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165764Re-query CCDS DB by Protein ID:ENSMUSP00000130005
Original member Current member NCBI NM_010009.2 NP_034139.2 Accepted alive Link to Nucleotide Sequence:NM_010009.2Link to Protein Sequence:NP_034139.2Re-query CCDS DB by Nucleotide ID:NM_010009Re-query CCDS DB by Protein ID:NP_034139Link to BLAST:NP_034139.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034139.2 507 O35084 507 100% 0 0

Chromosomal Locations for CCDS 24224.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127048281 127048475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127049065 127049255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127049680 127049882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127049969 127050169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127050242 127050414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127050678 127050847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127051050 127051128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127051513 127051710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127052031 127052144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGACCCAGGCAGTCAAGCTCGCCTCCAGAGTTTTTCACCGAATCCACCTGCCTCTGCAGCTGGATGCCT
CGCTGGGCTCCAGAGGCAGTGAGTCGGTTCTCCGGAGCTTGTCTGACATCCCTGGGCCCTCTACACTCAG
CTTCCTGGCTGAACTCTTCTGCAAAGGGGGGCTGTCCAGGCTGCATGAACTGCAGGTGCATGGCGCTGCG
CGGTACGGGCCAATATGGTCTGGCAGCTTTGGGACACTTCGCACAGTTTACGTTGCCGACCCTACACTTG
TGGAGCAGCTCCTGCGACAAGAAAGTCACTGTCCAGAGCGCTGTAGTTTCTCATCATGGGCAGAGCACCG
TCGCCGCCACCAGCGTGCTTGCGGATTGCTAACGGCGGATGGTGAAGAATGGCAGAGGCTCCGAAGTCTT
CTGGCCCCGCTCCTCCTCCGGCCACAAGCAGCCGCGGGCTATGCTGGAACTCTGGACAACGTGGTCCGTG
ACCTTGTGCGACGACTAAGGCGCCAGCGGGGACGTGGCTCTGGGCTACCCGGCCTAGTTCTGGACGTGGC
AGGAGAGTTTTACAAATTTGGCCTAGAAAGTATAGGCGCGGTGCTGCTGGGATCGCGCCTGGGCTGCCTA
GAGGCTGAAGTCCCTCCTGACACAGAAACCTTCATACATGCAGTGGGCTCAGTGTTTGTGTCTACACTCT
TGACCATGGCGATGCCCAACTGGTTGCACCACCTTATACCTGGACCCTGGGCCCGCCTCTGCCGAGACTG
GGATCAGATGTTTGCCTTTGCCCAGAGGCACGTGGAGCTGCGAGAAGGTGAAGCTGCGATGAGGAACCAG
GGAAAGCCTGAGGAGGATATGCCGTCTGGGCATCACTTAACCCACTTCCTTTTTCGGGAAAAGGTGTCTG
TCCAGTCCATAGTGGGGAATGTGACAGAGCTACTACTGGCTGGAGTGGACACGGTATCCAATACGCTCTC
CTGGACACTCTATGAGCTTTCCCGGCACCCCGATGTCCAGACTGCACTCCACTCTGAGATCACAGCTGGG
ACCCGTGGCTCCTGTGCCCACCCCCATGGCACTGCTCTGTCCCAGCTGCCCCTGTTAAAGGCTGTGATCA
AAGAAGTGTTGAGATTGTACCCTGTGGTACCTGGGAATTCCCGTGTCCCAGACAGAGACATCCGTGTAGG
AAACTATGTAATTCCCCAAGATACGCTAGTCTCCCTATGTCACTATGCCACTTCAAGGGACCCCACACAG
TTTCCAGACCCCAACTCTTTTAATCCAGCTCGCTGGCTGGGGGAGGGTCCGACCCCCCACCCATTTGCAT
CTCTTCCCTTCGGCTTTGGCAAACGGAGCTGCATCGGGAGACGCTTGGCAGAGCTTGAGCTACAAATGGC
TTTGTCCCAGATCTTGACCCATTTTGAAGTGCTACCTGAGCCAGGTGCTCTTCCTATCAAGCCCATGACC
CGGACTGTCCTGGTCCCTGAGAGGAGCATCAATCTACAGTTTGTAGATAGATAA

Translation (507 aa):
MTQAVKLASRVFHRIHLPLQLDASLGSRGSESVLRSLSDIPGPSTLSFLAELFCKGGLSRLHELQVHGAA
RYGPIWSGSFGTLRTVYVADPTLVEQLLRQESHCPERCSFSSWAEHRRRHQRACGLLTADGEEWQRLRSL
LAPLLLRPQAAAGYAGTLDNVVRDLVRRLRRQRGRGSGLPGLVLDVAGEFYKFGLESIGAVLLGSRLGCL
EAEVPPDTETFIHAVGSVFVSTLLTMAMPNWLHHLIPGPWARLCRDWDQMFAFAQRHVELREGEAAMRNQ
GKPEEDMPSGHHLTHFLFREKVSVQSIVGNVTELLLAGVDTVSNTLSWTLYELSRHPDVQTALHSEITAG
TRGSCAHPHGTALSQLPLLKAVIKEVLRLYPVVPGNSRVPDRDIRVGNYVIPQDTLVSLCHYATSRDPTQ
FPDPNSFNPARWLGEGPTPHPFASLPFGFGKRSCIGRRLAELELQMALSQILTHFEVLPEPGALPIKPMT
RTVLVPERSINLQFVDR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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