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Report for CCDS24230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24230.1 Public Mus musculus 10 B4galnt1 23 108 98 CCDS HistoryNCBI Gene:14421Re-query CCDS DB by CCDS ID:24230.1Re-query CCDS DB by GeneID:14421See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006914.10 ENSMUSP00000006914.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006914.10Link to Ensembl Protein Viewer:ENSMUSP00000006914.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000006914Re-query CCDS DB by Protein ID:ENSMUSP00000006914
Original member NCBI NM_008080.5 NP_032106.1 Updated not alive Link to Nucleotide Sequence:NM_008080.5Link to Protein Sequence:NP_032106.1Re-query CCDS DB by Nucleotide ID:NM_008080Re-query CCDS DB by Protein ID:NP_032106
Current member NCBI NM_008080.6 NP_032106.1 Accepted alive Link to Nucleotide Sequence:NM_008080.6Link to Protein Sequence:NP_032106.1Re-query CCDS DB by Nucleotide ID:NM_008080Re-query CCDS DB by Protein ID:NP_032106Link to BLAST:NP_032106.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032106.1 533 Q09200 533 100% 0 0

Chromosomal Locations for CCDS 24230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127166005 127166222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127166718 127166882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127166999 127167105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127167502 127167542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127167701 127167881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127169744 127169842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127169978 127170168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127170591 127170731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127170919 127171159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127171616 127171833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGCGGCTAGACCGCCGGGCCCTCTATGCGCTAGTCTTGCTGCTCGCCTGCGCCTCGCTGGGTCTCCTGT
ACTCCAGCACCCGAAACGCGCCAAGTCTCCCGAACCCTCTGGCATTGTGGTCGCCCCCACAAGGTCCCCC
GAGACTCGATCTGCTAGACCTTGCCCCTGAGCCTCGCTACGCACACATCCCGGTCAGGATCAAGGAGCAA
GTGGTGGGGCTGCTGGCTCAGAACAACTGCAGTTGTGAATCCAAGGGAGGAAGCCTTCCCTTGCCCTTTC
TGAGACAGGTTCGGGCGGTTGACCTCACTAAAGCCTTTGACGCTGAGGAGCTGAGGGCTGTTTCTGTCGC
CAGGGAGCAGGAATACCAGGCCTTCCTTGCAAGGAGCCGGTCCCTGGCTGACCAGCTGCTGATAGCTCCC
GCCAACTCCCCCTTACAGTACCCCCTGCAGGGTGTGGAGGTTCAGCCCCTCAGGAGCATCCTGGTGCCAG
GGCTAAGTCTGCAGGAAGCTTCTGTCCAGGAGATATACCAGGTGAACCTGAGTGCTTCTCTAGGCACCTG
GGACGTGGCAGGGGAAGTAACAGGAGTGACTCTCACGGGAGAGGGGCAACCGGATCTCACCCTTGCCAGC
CCAGTTCTGGATAAACTCAACCGGCAGCTGCAACTGGTGACTTACAGCAGCCGGAGCTACCAGGCCAACA
CAGCAGACACAGTCCGGTTCTCCACCAAGGGACATGAAGTTGCCTTCACCATCCTCGTAAGACACCCTCC
CAACCCCCGGCTGTACCCACCATCATCCCTACCCCAAGGAGCCGAGTACAACATCAGTGCTCTGGTTACC
ATTGCCACCAAGACTTTTCTTCGTTATGATCGACTACGGACACTCATTGCCAGCATCCGACGCTTTTACC
CTACGGTCACCATAGTCATCGCTGACGACAGTGACAAACCGGAGCGCATTAGCGACCCACACGTGGAGCA
CTACTTCATGCCCTTCGGCAAGGGTTGGTTCGCAGGTCGGAACCTGGCGGTGTCCCAAGTAACCACCAAA
TACGTGCTGTGGGTGGACGACGACTTTGTCTTCACGGCGCGCACGCGGCTGGAGAAGCTTGTGGACGTGC
TCGAGAAGACGCCCCTGGACCTGGTAGGGGGCGCGGTGCGGGAGATCTCGGGCTACGCTACCACCTACCG
GCAGCTGCTGAGTGTGGAGCCGGGCGCCCCAGGCCTTGGGAACTGCTTCCGGCAAAAGCAGGGCTTCCAC
CACGAGCTCGTTGGCTTCCCAAGTTGTGTGGTCACAGACGGCGTGGTCAACTTCTTCCTGGCGCGCACAG
ACAAAGTGCGCCAAGTGGGCTTTGACCCACGCCTCAACCGGGTGGCACATCTGGAATTCTTCCTGGATGG
ACTTGGTTTCCTTCGTGTTGGCTCCTGCTCTGATGTTGTTGTGGATCATGCATCGAAGGTGAAGCTGCCG
TGGACAGCAAAAGACCCAGGAGCTGAAACTTATGCCCGTTACCGGTACCCGGGATCACTGGACCAAAGTC
AAGTGGCCAAACATCGCCTACTCTTCTTCAAACACCGGCTACAGTGCATGACCGCCGAGTGA

Translation (533 aa):
MRLDRRALYALVLLLACASLGLLYSSTRNAPSLPNPLALWSPPQGPPRLDLLDLAPEPRYAHIPVRIKEQ
VVGLLAQNNCSCESKGGSLPLPFLRQVRAVDLTKAFDAEELRAVSVAREQEYQAFLARSRSLADQLLIAP
ANSPLQYPLQGVEVQPLRSILVPGLSLQEASVQEIYQVNLSASLGTWDVAGEVTGVTLTGEGQPDLTLAS
PVLDKLNRQLQLVTYSSRSYQANTADTVRFSTKGHEVAFTILVRHPPNPRLYPPSSLPQGAEYNISALVT
IATKTFLRYDRLRTLIASIRRFYPTVTIVIADDSDKPERISDPHVEHYFMPFGKGWFAGRNLAVSQVTTK
YVLWVDDDFVFTARTRLEKLVDVLEKTPLDLVGGAVREISGYATTYRQLLSVEPGAPGLGNCFRQKQGFH
HELVGFPSCVVTDGVVNFFLARTDKVRQVGFDPRLNRVAHLEFFLDGLGFLRVGSCSDVVVDHASKVKLP
WTAKDPGAETYARYRYPGSLDQSQVAKHRLLFFKHRLQCMTAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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