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Report for CCDS24250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24250.1 Public Mus musculus 10 Rdh1 23 108 98 CCDS HistoryNCBI Gene:107605Re-query CCDS DB by CCDS ID:24250.1Re-query CCDS DB by GeneID:107605See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073639.5 ENSMUSP00000073322.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073639.5Link to Ensembl Protein Viewer:ENSMUSP00000073322.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000073639Re-query CCDS DB by Protein ID:ENSMUSP00000073322
Original member Current member NCBI NM_080436.3 NP_536684.2 Accepted alive Link to Nucleotide Sequence:NM_080436.3Link to Protein Sequence:NP_536684.2Re-query CCDS DB by Nucleotide ID:NM_080436Re-query CCDS DB by Protein ID:NP_536684Link to BLAST:NP_536684.2

Chromosomal Locations for CCDS 24250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127759938 127760250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127762965 127763223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127764682 127764845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127765321 127765538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGTGGCTCTACCTGGTTGCACTGGTGGGCCTGTGGACGCTCCTGCGCTTCTTTAGGGAGAGGCAGGTGG
TGAGCCATCTCCAAGACAAGTATGTCTTCATCACGGGCTGTGACTCTGGCTTTGGGAACCTGCTGGCCAG
ACAGCTGGACAGGAGAGGCATGAGGGTATTGGCTGCATGTCTGACGGAGAAGGGAGCCGAGGAGCTGAGG
AACAAGACATCTGACAGGCTGGAGACAGTGATCCTGGATGTCACCAAGACAGAGAGTATTGTGGCAGCCA
CTCAGTGGGTGAAGGAGCGTGTTGGGAACAGAGGACTCTGGGGCCTGGTCAACAACGCTGGCATCTCCAC
CCCCTCGGGTCCCAACGAGTGGATGAAAAAACAGGACTTTGCAAGAGTACTGGATGTGAACCTGTTGGGC
ATGATCGAGGTGACTCTGAGCATGCTGCCCTTAGTGAGGAAGGCGAGGGGTCGTGTGGTCAACGTCTCCA
GCGTCATGGGCCGAATGTCTTTCTTTGGTGGTGGTTACTGCATCTCCAAGTATGGTGTAGAGGCCTTCTC
AGACTCCCTCAGGAGGGAGCTCTCCTATTTTGGGGTGAAGGTGGCTATTATAGAGCCTGGAGGCTTCAAG
ACTTGTGTGACAAGTAGTGACAGGCTATCATCAAACACCAAGATGATCTGGGACAAGGCCAGCTCGGAAG
TCAAAGAGATCTATGGCGAGAAGTTTTTATTATTCTATCTGAAAAACCTAAACGAATTGGACAAGAGGTG
CAACAAGGACCTGTCTGTGGTGACTGACTGCATGGAGCACGCTCTGACTGCCTGCCACCCTCGCACTCGA
TACTCAGCAGGCTGGGATGCCAAGTTCCTCTTCCTCCCCTTGAGCTACCTGCCCACCTTTCTTGTGGATG
CCCTTCTCTACTGGACTTCCATGAAGCCTGAGAAAGCCCTCTGA

Translation (317 aa):
MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKGAEELR
NKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSGPNEWMKKQDFARVLDVNLLG
MIEVTLSMLPLVRKARGRVVNVSSVMGRMSFFGGGYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGGFK
TCVTSSDRLSSNTKMIWDKASSEVKEIYGEKFLLFYLKNLNELDKRCNKDLSVVTDCMEHALTACHPRTR
YSAGWDAKFLFLPLSYLPTFLVDALLYWTSMKPEKAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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