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Report for CCDS24259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24259.1 Public Mus musculus 10 Atp5f1b 23 108 98 CCDS HistoryNCBI Gene:11947Re-query CCDS DB by CCDS ID:24259.1Re-query CCDS DB by GeneID:11947See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24259.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026459.5 ENSMUSP00000026459.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026459.5Link to Ensembl Protein Viewer:ENSMUSP00000026459.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026459Re-query CCDS DB by Protein ID:ENSMUSP00000026459
Original member Current member NCBI NM_016774.3 NP_058054.2 Accepted alive Link to Nucleotide Sequence:NM_016774.3Link to Protein Sequence:NP_058054.2Re-query CCDS DB by Nucleotide ID:NM_016774Re-query CCDS DB by Protein ID:NP_058054Link to BLAST:NP_058054.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058054.2 529 P56480 529 100% 0 0

Chromosomal Locations for CCDS 24259.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128083327 128083453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128083892 128084074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128084297 128084471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128085091 128085212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128085442 128085626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128086038 128086196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128086298 128086420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128088321 128088533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128088957 128089158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128090019 128090119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGTTGAGTCTTGTGGGGCGTGTGGCCTCGGCCTCGGCCTCCGGGGCCTTGCGGGGACTCAGCCCTTCGG
CGGCTCTGCCACAGGCGCAGCTTCTACTGCGAGCTGCTCCCGCCGGGGTTCATCCTGCCAGAGACTATGC
GGCGCAGGCGTCTGCGGCCCCGAAGGCAGGCACTGCCACCGGGCGAATCGTGGCAGTCATCGGCGCTGTG
GTGGACGTCCAGTTCGATGAGGGATTACCACCCATCCTAAATGCCCTGGAAGTGCAAGGCAGGGACAGCA
GACTGGTTTTGGAGGTGGCCCAGCATTTGGGGGAGAGCACGGTCAGAACTATTGCTATGGATGGCACTGA
AGGCTTGGTTAGAGGCCAGAAAGTACTGGATTCAGGGGCACCAATCAAAATTCCTGTTGGTCCTGAGACC
TTGGGCAGAATCATGAATGTCATTGGAGAACCTATTGATGAGAGAGGTCCTATCAAAACCAAACAATTTG
CTCCTATTCATGCTGAGGCTCCTGAGTTCATAGAGATGAGTGTTGAGCAGGAGATTCTGGTGACTGGGAT
AAAGGTTGTGGATCTGCTGGCCCCATACGCCAAGGGTGGGAAAATCGGACTCTTTGGAGGTGCTGGCGTT
GGAAAGACAGTACTGATCATGGAGCTAATCAACAATGTCGCCAAAGCCCATGGTGGTTACTCTGTATTTG
CTGGTGTTGGTGAGAGGACCCGTGAGGGCAATGATTTATACCATGAAATGATTGAATCTGGTGTTATCAA
TCTAAAAGATGCCACTTCCAAGGTAGCGTTGGTATATGGACAGATGAACGAACCACCTGGCGCTCGAGCC
CGGGTAGCTCTGACTGGTTTGACCGTTGCTGAATACTTCAGAGACCAGGAGGGCCAAGATGTCCTGCTGT
TTATTGACAACATCTTCCGCTTTACCCAGGCTGGCTCAGAGGTGTCTGCCTTATTGGGCAGAATCCCTTC
TGCTGTAGGCTACCAGCCCACCCTAGCCACCGACATGGGCACAATGCAGGAAAGGATCACCACCACCAAG
AAGGGATCGATCACCTCGGTGCAGGCTATCTATGTGCCTGCTGATGACCTGACTGACCCTGCCCCTGCAA
CCACCTTTGCCCATTTGGATGCTACCACTGTGTTGTCCCGGGCTATTGCTGAGTTGGGCATCTATCCAGC
TGTGGATCCACTGGACTCCACCTCTCGAATTATGGATCCCAACATTGTTGGCAATGAGCATTATGACGTC
GCCCGAGGAGTGCAGAAAATCCTGCAGGACTACAAATCTCTCCAGGACATCATTGCCATCTTGGGTATGG
ATGAACTTTCTGAGGAAGATAAATTGACTGTGTCCCGGGCAAGAAAGATACAGCGCTTCTTGTCTCAGCC
ATTCCAAGTTGCTGAGGTCTTCACGGGTCACATGGGGAAGCTGGTGCCCTTGAAGGAGACCATTAAAGGA
TTCCAGCAGATTTTAGCAGGTGAATATGACCATCTCCCAGAACAAGCCTTCTACATGGTGGGACCCATTG
AAGAAGCCGTGGCAAAGGCTGATAAGCTGGCAGAAGAGCACGGGTCGTGA

Translation (529 aa):
MLSLVGRVASASASGALRGLSPSAALPQAQLLLRAAPAGVHPARDYAAQASAAPKAGTATGRIVAVIGAV
VDVQFDEGLPPILNALEVQGRDSRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPET
LGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV
GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARA
RVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK
KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGNEHYDV
ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGKLVPLKETIKG
FQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAEEHGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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