NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24373.1 Public Mus musculus 11 Gal3st1 23 108 98 CCDS HistoryNCBI Gene:53897Re-query CCDS DB by CCDS ID:24373.1Re-query CCDS DB by GeneID:53897See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 24373.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063004.13 ENSMUSP00000058348.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063004.13Link to Ensembl Protein Viewer:ENSMUSP00000058348.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000063004Re-query CCDS DB by Protein ID:ENSMUSP00000058348
Original member Current member EBI ENSMUST00000078757.7 ENSMUSP00000077815.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078757.7Link to Ensembl Protein Viewer:ENSMUSP00000077815.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000078757Re-query CCDS DB by Protein ID:ENSMUSP00000077815
Original member Current member EBI ENSMUST00000109981.1 ENSMUSP00000105608.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109981.1Link to Ensembl Protein Viewer:ENSMUSP00000105608.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109981Re-query CCDS DB by Protein ID:ENSMUSP00000105608
Original member Current member NCBI NM_001177691.1 NP_001171162.1 Accepted alive Link to Nucleotide Sequence:NM_001177691.1Link to Protein Sequence:NP_001171162.1Re-query CCDS DB by Nucleotide ID:NM_001177691Re-query CCDS DB by Protein ID:NP_001171162Link to BLAST:NP_001171162.1
Original member Current member NCBI NM_001177703.1 NP_001171174.1 Accepted alive Link to Nucleotide Sequence:NM_001177703.1Link to Protein Sequence:NP_001171174.1Re-query CCDS DB by Nucleotide ID:NM_001177703Re-query CCDS DB by Protein ID:NP_001171174Link to BLAST:NP_001171174.1
Original member Current member NCBI NM_016922.3 NP_058618.2 Accepted alive Link to Nucleotide Sequence:NM_016922.3Link to Protein Sequence:NP_058618.2Re-query CCDS DB by Nucleotide ID:NM_016922Re-query CCDS DB by Protein ID:NP_058618Link to BLAST:NP_058618.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171162.1 423 Q9JHE4 423 100% 0 0
NP_001171174.1 423 Q9JHE4 423 100% 0 0
NP_058618.2 423 Q9JHE4 423 100% 0 0

Chromosomal Locations for CCDS 24373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3996921 3997051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3997926 3999066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGACTCTGCTGCCAAAGAAGCCCTGCAAGTCCAAGGCCAAGGGGTTACTGCTGGGAGCTCTCTTCACCA
GTTTCCTATTGCTGCTGTACTCCTATGTGGTACCTCCACTGTATCCCAACATGGCCTTCACGACCTCAGA
GGCTGCAGCACCCTGCTCCCCTATTCCCAATGAGCCAGTGGCAGCCACTCCCGCCAACGGCTCAGCAGGA
GGGTGTCAACCTCGGCGAGATATTGTGTTCATGAAGACGCACAAGACCGCCAGCAGCACACTGCTCAACA
TCCTGTTCCGCTTCGGCCAGAAGCACGAGCTCAAGTTCGCTTTCCCCAATGGCCGAAACGACTTCCACTA
CCCGTCGTACTTTGCACGAAGCCTGGTGCAGGACTACCGGCCTGGGGCGTGCTTCAACATCATCTGCAAC
CACATGCGCTTCCACTATGAGGAAGTGCGCGGGCTGGTGCGGCCGGGTGCCACCTTCATCACCGTCATCC
GCGACCCTGCTCGTCTCTTCGAGTCTTCCTTCCACTACTTTGGATCCGTGGTGCCGCTCACCTGGAAGCT
GTCGAGCCGCGACAAGCTGGCCGAGTTCCTGCAGGACCCCGATCGCTACTACGACCCGAGCAGCTACAAC
GCGCACTACCTCCGCAACCTGCTCTTCTTCGATCTGGGCTATGATAGTAGCCTGGACCCGGCCAGCCCGC
GCGTGCAGGAGCACATCCTGGAGGTGGAGCGCCGCTTCCACTTGGTGCTACTGCAGGAGTACTTCGACGA
ATCCCTGGTGCTGCTCCGAGAGCTGCTGTGCTGGGACCTGGAGGACGTGCTGTATTTCAAGCTCAATGCG
CGGCGCGACTCGCCGGTTCCGCGGCTCTCTGGCGAGCTGTACCGCCGAGCCACCGCCTGGAACCTGCTGG
ACGTGCGCCTCTACCGTCACTTCAACGCCAGCTTCTGGCGAAAGGTGGAAGCTTTCGGGCGTGAGCGCAT
GGCGCGCGAGGTAGCCGAGCTGCGCCAAGCGAACGAGCACATGCGCCACATCTGCATAGATGGCGGCCAA
GCAGTTGGTGCTGAGGCCATCCAGGACTCGGCCATGCAGCCCTGGCAACCCCTGGGCATCAAGTCCATCC
TGGGTTACAACCTCAAGAAGAGCATCGGGCCACAACACGAGCAGCTCTGCCGGCGCATGCTCACGCCCGA
AATCCAGTACCTGTCTGACCTCGGTGCCAATCTCTGGGTCACCAAGCTCTGGAAGTTCCTTAGGGACTTT
CTAAGGTGGTGA

Translation (423 aa):
MTLLPKKPCKSKAKGLLLGALFTSFLLLLYSYVVPPLYPNMAFTTSEAAAPCSPIPNEPVAATPANGSAG
GCQPRRDIVFMKTHKTASSTLLNILFRFGQKHELKFAFPNGRNDFHYPSYFARSLVQDYRPGACFNIICN
HMRFHYEEVRGLVRPGATFITVIRDPARLFESSFHYFGSVVPLTWKLSSRDKLAEFLQDPDRYYDPSSYN
AHYLRNLLFFDLGYDSSLDPASPRVQEHILEVERRFHLVLLQEYFDESLVLLRELLCWDLEDVLYFKLNA
RRDSPVPRLSGELYRRATAWNLLDVRLYRHFNASFWRKVEAFGRERMAREVAELRQANEHMRHICIDGGQ
AVGAEAIQDSAMQPWQPLGIKSILGYNLKKSIGPQHEQLCRRMLTPEIQYLSDLGANLWVTKLWKFLRDF
LRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH