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Report for CCDS24432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24432.1 Public Mus musculus 11 Upp1 23 108 98 CCDS HistoryNCBI Gene:22271Re-query CCDS DB by CCDS ID:24432.1Re-query CCDS DB by GeneID:22271See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24432.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020677.7 ENSMUSP00000020677.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020677.7Link to Ensembl Protein Viewer:ENSMUSP00000020677.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000020677Re-query CCDS DB by Protein ID:ENSMUSP00000020677
Original member Current member EBI ENSMUST00000101525.8 ENSMUSP00000099063.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101525.8Link to Ensembl Protein Viewer:ENSMUSP00000099063.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101525Re-query CCDS DB by Protein ID:ENSMUSP00000099063
Original member Current member EBI ENSMUST00000164791.7 ENSMUSP00000127473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164791.7Link to Ensembl Protein Viewer:ENSMUSP00000127473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164791Re-query CCDS DB by Protein ID:ENSMUSP00000127473
Original member Current member NCBI NM_001159401.1 NP_001152873.1 Accepted alive Link to Nucleotide Sequence:NM_001159401.1Link to Protein Sequence:NP_001152873.1Re-query CCDS DB by Nucleotide ID:NM_001159401Re-query CCDS DB by Protein ID:NP_001152873Link to BLAST:NP_001152873.1
Original member Current member NCBI NM_001159402.1 NP_001152874.1 Accepted alive Link to Nucleotide Sequence:NM_001159402.1Link to Protein Sequence:NP_001152874.1Re-query CCDS DB by Nucleotide ID:NM_001159402Re-query CCDS DB by Protein ID:NP_001152874Link to BLAST:NP_001152874.1
Original member Current member NCBI NM_009477.3 NP_033503.2 Accepted alive Link to Nucleotide Sequence:NM_009477.3Link to Protein Sequence:NP_033503.2Re-query CCDS DB by Nucleotide ID:NM_009477Re-query CCDS DB by Protein ID:NP_033503Link to BLAST:NP_033503.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152873.1 311 P52624 311 100% 0 0
NP_001152874.1 311 P52624 311 100% 0 0
NP_033503.2 311 P52624 311 100% 0 0

Chromosomal Locations for CCDS 24432.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 9125652 9125698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9129488 9129605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9131630 9131788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9133234 9133348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9134722 9134931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9135164 9135310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9135961 9136100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGCAGCTACAGGAACTGAAGCAAAGGACCTTGAAAACCATCACAATGACTGCTTCATCCAACTTTCAA
ATCCAAACATAGCAGCAATGAAGGAAGACGTGCTCTACCATTTCAACCTCAGCACTAGCACACACGATTT
CCCTGCTATGTTTGGAGACGTGAAGTTTGTGTGTGTTGGTGGAAGCTCTTCCCGGATGAACACCTTCATC
AAGTATGTGGCTGCAGAGCTGGGCCTTGACCATCCAGGGAAGGAATATCCCAACATCTGTGCAGGCACTG
ACCGCTACGCCATGTATAAAGCCGGGCCCGTGCTGTCTGTGAGCCATGGCATGGGCATTCCTTCCATCGG
CATCATGTTGCACGAGCTCATCAAGATGCTGTACCATGCCAGGTGCTCCAACATCACCATCATCCGCATT
GGCACTTCAGGCGGGATAGGTCTGGAGCCTGGCTCTGTTGTCATCACGCAGCAGGCAGTGAATGAGTGCT
TCAAGCCGGAGTTTGAGCAGATTGTCCTGGGAAAACGGGTGATTCGCAACACCAACCTGGACGCGCAGCT
GGTTCAGGAGTTGGTGCAGTGCTCCTCAGACCTGAATGAGTTCCCCATGGTTGTGGGCAACACCATGTGC
ACCTTGGACTTCTATGAGGGGCAAGGCCGTCTGGATGGCGCCCTCTGCTCCTACACAGAGAAAGACAAAC
AGTCTTATCTGCGTGCAGCCCATGCCGCGGGTGTCCGAAATATCGAGATGGAATCTTCGGTGTTTGCCAC
CATGTGCAGTGCCTGTGGCCTGAAAGCGGCTGTGGTGTGTGTCACCCTTCTGGACCGTCTGCAAGGAGAC
CAGATCAACACTCCCCACGATGTGCTTGTGGAATACCAGCAGAGACCACAGCGGCTAGTGGGCCACTTCA
TCAAGAAGAGCCTGGGACGGGCCTGA

Translation (311 aa):
MAATGTEAKDLENHHNDCFIQLSNPNIAAMKEDVLYHFNLSTSTHDFPAMFGDVKFVCVGGSSSRMNTFI
KYVAAELGLDHPGKEYPNICAGTDRYAMYKAGPVLSVSHGMGIPSIGIMLHELIKMLYHARCSNITIIRI
GTSGGIGLEPGSVVITQQAVNECFKPEFEQIVLGKRVIRNTNLDAQLVQELVQCSSDLNEFPMVVGNTMC
TLDFYEGQGRLDGALCSYTEKDKQSYLRAAHAAGVRNIEMESSVFATMCSACGLKAAVVCVTLLDRLQGD
QINTPHDVLVEYQQRPQRLVGHFIKKSLGRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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