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Report for CCDS24439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24439.1 Public Mus musculus 11 Ddc 23 108 98 CCDS HistoryNCBI Gene:13195Re-query CCDS DB by CCDS ID:24439.1Re-query CCDS DB by GeneID:13195See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066237.9 ENSMUSP00000068525.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066237.9Link to Ensembl Protein Viewer:ENSMUSP00000068525.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066237Re-query CCDS DB by Protein ID:ENSMUSP00000068525
Original member Current member EBI ENSMUST00000109659.8 ENSMUSP00000105286.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109659.8Link to Ensembl Protein Viewer:ENSMUSP00000105286.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109659Re-query CCDS DB by Protein ID:ENSMUSP00000105286
Original member Current member EBI ENSMUST00000178704.7 ENSMUSP00000136467.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178704.7Link to Ensembl Protein Viewer:ENSMUSP00000136467.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178704Re-query CCDS DB by Protein ID:ENSMUSP00000136467
Original member Current member NCBI NM_001190448.1 NP_001177377.1 Accepted alive Link to Nucleotide Sequence:NM_001190448.1Link to Protein Sequence:NP_001177377.1Re-query CCDS DB by Nucleotide ID:NM_001190448Re-query CCDS DB by Protein ID:NP_001177377Link to BLAST:NP_001177377.1
Original member NCBI NM_016672.4 NP_057881.1 Updated not alive Link to Nucleotide Sequence:NM_016672.4Link to Protein Sequence:NP_057881.1Re-query CCDS DB by Nucleotide ID:NM_016672Re-query CCDS DB by Protein ID:NP_057881
Current member NCBI NM_016672.5 NP_057881.1 Accepted alive Link to Nucleotide Sequence:NM_016672.5Link to Protein Sequence:NP_057881.1Re-query CCDS DB by Nucleotide ID:NM_016672Re-query CCDS DB by Protein ID:NP_057881Link to BLAST:NP_057881.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177377.1 480 O88533 480 100% 0 0
NP_057881.1 480 O88533 480 100% 0 0

Chromosomal Locations for CCDS 24439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 11815228 11815428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11819291 11819392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11822195 11822293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11824849 11824868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11829102 11829178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11835742 11835809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11839398 11839492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11846636 11846702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11863651 11863794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11864894 11865028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11873134 11873253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11876245 11876358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11880442 11880642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGATTCCCGTGAATTCCGGAGGAGAGGCAAGGAGATGGTGGATTATATAGCTGACTATCTGGATGGCA
TTGAGGGTCGTCCAGTGTACCCTGATGTGGAGCCTGGCTATCTTCGGCCCCTGATCCCTGCCACTGCCCC
CCAGGAGCCAGAAACATACGAGGACATAATCAAAGACATCGAGAAGATAATCATGCCAGGGGTGACACAC
TGGCACAGTCCCTATTTCTTCGCTTACTTCCCCACGGCTAGCTCATACCCAGCTATGCTTGCAGACATGC
TGTGTGGTGCTATTGGCTGCATTGGTTTCTCCTGGGCTGCAAGCCCAGCGTGCACAGAGCTGGAGACCGT
GATGATGGACTGGCTGGGGAAGATGCTGGAGCTGCCAGAGGCCTTTTTGGCTGGAAGAGCTGGGGAAGGG
GGAGGAGTGATCCAGGGAAGTGCCAGTGAAGCCACCTTGGTGGCCCTACTGGCTGCTCGGACTAAAGTTA
TCCGCCAGCTGCAGGCAGCCTCCCCAGAGTTCACACAAGCTGCTATCATGGAAAAGCTGGTTGCTTACAC
ATCTGATCAGGCGCATTCCTCTGTAGAAAGAGCTGGGTTAATTGGTGGAATAAAGCTAAAAGCAGTCCCT
TCGGATGGCAACTTTTCCATGAGAGCTTCTGCCCTTCGGGAAGCCCTGGAGCGGGACAAGGCAGCTGGCC
TGATTCCATTCTTTGTGGTCGCTACACTGGGGACCACATCCTGCTGTTCTTTTGACAATCTCCTGGAAGT
GGGTCCCATCTGCAACCAGGAGGGTGTGTGGCTGCACATTGACGCTGCTTACGCGGGCAGTGCCTTTATC
TGTCCTGAATTCCGGTATCTTCTGAATGGTGTGGAGTTTGCAGATTCCTTTAACTTTAATCCCCACAAGT
GGCTTTTGGTGAACTTTGACTGCTCTGCCATGTGGGTGAAGAGGAGGACTGACTTAACCGGAGCCTTTAA
TATGGACCCTGTTTATCTAAAGCACAGTCACCAGGACTCAGGATTCATCACTGACTACAGGCACTGGCAG
ATCCCACTGGGGCGACGATTTCGCTCTTTGAAAATGTGGTTTGTTTTTAGAATGTACGGAGTCAAGGGGC
TGCAGGCTTACATCCGAAAGCACGTGGAGCTGTCTCATGAGTTTGAGTCACTGGTACGCCAGGACCCTCG
CTTTGAAATTTGCACAGAAGTCATTCTTGGGTTGGTCTGCTTCCGGCTAAAGGGCTCCAATGAGTTGAAC
GAAACTCTCTTACAAAGAATAAACAGCGCCAAAAAAATCCACTTGGTTCCATGTCGTCTCCGAGACAAGT
TTGTGCTACGCTTTGCTGTGTGCGCTCGCACTGTGGAGTCTGCCCACGTGCAGCTGGCCTGGGAACACAT
CAGTGATCTAGCAAGCAGTGTGCTGAGGGCAGAGAAAGAATGA

Translation (480 aa):
MDSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRPLIPATAPQEPETYEDIIKDIEKIIMPGVTH
WHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELPEAFLAGRAGEG
GGVIQGSASEATLVALLAARTKVIRQLQAASPEFTQAAIMEKLVAYTSDQAHSSVERAGLIGGIKLKAVP
SDGNFSMRASALREALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICNQEGVWLHIDAAYAGSAFI
CPEFRYLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFNMDPVYLKHSHQDSGFITDYRHWQ
IPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVELSHEFESLVRQDPRFEICTEVILGLVCFRLKGSNELN
ETLLQRINSAKKIHLVPCRLRDKFVLRFAVCARTVESAHVQLAWEHISDLASSVLRAEKE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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