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Report for CCDS24547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24547.1 Public Mus musculus 11 Mat2b 23 108 98 CCDS HistoryNCBI Gene:108645Re-query CCDS DB by CCDS ID:24547.1Re-query CCDS DB by GeneID:108645See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040167.10 ENSMUSP00000048222.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040167.10Link to Ensembl Protein Viewer:ENSMUSP00000048222.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000040167Re-query CCDS DB by Protein ID:ENSMUSP00000048222
Original member Current member NCBI NM_134017.2 NP_598778.1 Accepted alive Link to Nucleotide Sequence:NM_134017.2Link to Protein Sequence:NP_598778.1Re-query CCDS DB by Nucleotide ID:NM_134017Re-query CCDS DB by Protein ID:NP_598778Link to BLAST:NP_598778.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598778.1 334 Q99LB6-1 334 100% 0 0

Chromosomal Locations for CCDS 24547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 40680024 40680194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40680656 40680769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40682464 40682657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40684682 40684834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40685227 40685341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40687601 40687795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40692478 40692540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGTGGGCCGGGAGAAGGAGCTCTCCATCCACTTCGTCCCCGGCTGCTGCCAGCTGGTGGAGGAGGAAG
TGAACATCCCTAGCCGGCGGGTTCTCATTACTGGTGCCACTGGGCTTCTTGGCAGAGCAGTTTACAAAGA
GTTTCAGCAGAGCAACTGGCACACCGTTGGCTGTGGCTTTCGAAGAGCAAGACCAAAATTCGAACAAGTG
AACCTGTTGGATTCTGAAGCTGTTCATCACCTCATTCATGATTTCCAGCCTCATGTCATAGTGCATTGTG
CTGCAGAGAGAAGACCTGATGTTGTTGAGAGTCAGCCAGATGCTGCTTCCCAGCTGAATGTGGGTGCCTC
TGGGAACTTGGCAAAGGAGGCAGCTGCGATTGGAGCATTTCTCATCTACATTAGCTCAGATTATGTGTTT
GATGGCACAAATCCCCCTTACACAGAAGAAGATATACCAAGTCCCCTGAATCTATATGGAAAAACAAAAT
TAGATGGAGAAAAAGCAGTCCTGGAGAATAATTTAGGGGCTGCTGTGTTGAGAATTCCTGTTCTGTATGG
GGAAGTTGAAAAGCTTGAAGAAAGTGCTGTGACTGTTATGTTCGACAAGGTGCAGTTCAGCAACAAGTCA
GCAAACATGGACCATTGGCAGCAGAGGTTCCCCACACATGTGAAAGACGTAGCCAGTGTGTGCCGGCAGC
TGGCAGAGAAGAGGATGCTGGATCCATCCATTAAGGGAACCTTTCACTGGTCTGGCAATGAGCAGATGAC
CAAGTATGAAATGGCGTGTGCAATTGCAGATGCCTTCAACCTCCCCAGCAGCCACTTAAGACCTATTACT
GACAGTCCTGTCATAGGAGCACAGCGCCCCAAAAATGCTCAGCTCGATTGCTCCAAATTGGAGACGTTGG
GCATTGGCCAGAGGACACCATTTCGAACTGGAATCAAAGAATCTCTCTGGCCTTTCCTCATCGACAAGAG
ATGGAGACAGACTGTCTTTCATTAG

Translation (334 aa):
MVGREKELSIHFVPGCCQLVEEEVNIPSRRVLITGATGLLGRAVYKEFQQSNWHTVGCGFRRARPKFEQV
NLLDSEAVHHLIHDFQPHVIVHCAAERRPDVVESQPDAASQLNVGASGNLAKEAAAIGAFLIYISSDYVF
DGTNPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYGEVEKLEESAVTVMFDKVQFSNKS
ANMDHWQQRFPTHVKDVASVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPIT
DSPVIGAQRPKNAQLDCSKLETLGIGQRTPFRTGIKESLWPFLIDKRWRQTVFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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