NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24630.1 Public Mus musculus 11 Mgat4b 23 108 98 CCDS HistoryNCBI Gene:103534Re-query CCDS DB by CCDS ID:24630.1Re-query CCDS DB by GeneID:103534See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24630.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041725.13 ENSMUSP00000043346.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041725.13Link to Ensembl Protein Viewer:ENSMUSP00000043346.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041725Re-query CCDS DB by Protein ID:ENSMUSP00000043346
Original member Current member NCBI NM_145926.3 NP_666038.3 Accepted alive Link to Nucleotide Sequence:NM_145926.3Link to Protein Sequence:NP_666038.3Re-query CCDS DB by Nucleotide ID:NM_145926Re-query CCDS DB by Protein ID:NP_666038Link to BLAST:NP_666038.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666038.3 548 Q812F8 548 100% 0 0

Chromosomal Locations for CCDS 24630.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50225643 50225739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50230680 50230865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50230961 50231101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50231191 50231324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50231739 50231785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50232024 50232137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50232307 50232382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50232564 50232678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50232945 50233075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50233276 50233383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50233464 50233657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50234083 50234161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50234244 50234331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50234410 50234522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50234606 50234629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGAGGCTCCGCAATGGCACCTTCCTGACGCTGCTGCTCTTCTGCTTGTGCGCCTTCCTCTCGCTCTCCT
GGTACGCAGCGCTCAGCGGCCAGAAAGGTGACGTGGTGGACATTTACCAGCGCGAGTTCCTGGCTCTGCG
AGACCGTTTGCACGCGGCTGAGCAAGAGAGCCTGAAGCGCTCCAAGGAGCTAAACCTGGTGCTGGAAGAA
ATCAAGAGGGCAGTATCCGAGAGGCAAGCGCTGCGGGACGGAGAAGGCAATCGCACTTGGGGCCGCCTAA
CAGAGGATCCGCGACTGAAGCCGTGGAACGTCTCGCACAGGCACGTACTTCATCTGCCCACCGTCTTCCA
CCATCTGCCGCACCTGCTGGCTAAGGAGAGCAGTCTGCAGCCCGCAGTGCGAGTGGGCCAGGGCCGCACC
GGAGTATCCGTGGTGATGGGCATTCCGAGCGTACGGCGCGAGGTGCACTCGTACTTGACTGACACATTGC
ACTCGCTCATCTCGGAGCTGAGCCCGCAGGAGAAGGAAGACTCAGTCATCGTGGTGCTGATCGCCGAGAC
TGACCCACAGTACACTTCGGCAGTGACAGAGAACATCAAGGCCTTGTTCCCCACAGAGATCCATTCTGGG
CTCCTGGAAGTCATCTCCCCTTCCCCTCACTTCTACCCTGACTTCTCCCGCCTTCGAGAGTCCTTTGGGG
ACCCCAAGGAGAGAGTCAGGTGGAGGACCAAACAGAACCTCGATTACTGCTTCCTCATGATGTATGCACA
GTCCAAAGGCATCTACTATGTGCAGCTGGAGGATGACATTGTAGCCAAGCCCAACTACTTGAGCACTATG
AAGAACTTTGCCCTCCAGCAGCCCTCCGAGGACTGGATGATCCTGGAGTTCTCGCAGTTGGGCTTCATTG
GGAAGATGTTCAAGTCACTGGATCTGAGCCTGATTGTGGAGTTCATCCTCATGTTCTACCGGGACAAGCC
CATAGACTGGCTCCTGGACCACATCCTGTGGGTGAAAGTCTGCAACCCTGAGAAGGATGCGAAACATTGT
GATCGGCAGAAGGCCAACCTTCGGATCCGCTTCAAGCCGTCCCTTTTCCAGCATGTGGGCACTCACTCAT
CACTGGCGGGCAAAATCCAGAAACTGAAGGATAAAGACTTTGGAAAGCATGCTCTCCGGAAGGAGCACGT
GAACCCACCGGCAGAGGTGAGCACAAGCCTCAAGACGTACCAGCATTTCACCCTGGAGAAGGCCTACTTG
CGGGAGGATTTCTTCTGGGCCTTCACACCTGCCGCAGGAGACTTTATCCGGTTCCGCTTCTTCCAGCCAC
TGCGCCTTGAGCGGTTCTTCTTCCGAAGCGGGAACATCGAGCACCCGGAAGATAAGCTCTTCAACACTTC
TGTGGAGGTGCTGCCCTTTGATAACCCCCAGTCAGAGAAGGAGGCCCTTCAGGAAGGCCGCTCAGCCACT
CTCCGGTACCCTAGGAGCCCAGATGGATACCTCCAGATTGGCTCCTTCTACAAGGGTGTAGCTGAAGGAG
AAGTGGATCCTGCCTTTGGCCCCCTGGAAGCACTACGTCTCTCCATTCAGACTGACTCCCCGGTGTGGGT
CATTTTGAGTGAGATCTTTCTGAAAAAGGCCGACTAG

Translation (548 aa):
MRLRNGTFLTLLLFCLCAFLSLSWYAALSGQKGDVVDIYQREFLALRDRLHAAEQESLKRSKELNLVLEE
IKRAVSERQALRDGEGNRTWGRLTEDPRLKPWNVSHRHVLHLPTVFHHLPHLLAKESSLQPAVRVGQGRT
GVSVVMGIPSVRREVHSYLTDTLHSLISELSPQEKEDSVIVVLIAETDPQYTSAVTENIKALFPTEIHSG
LLEVISPSPHFYPDFSRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVAKPNYLSTM
KNFALQQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLLDHILWVKVCNPEKDAKHC
DRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKDKDFGKHALRKEHVNPPAEVSTSLKTYQHFTLEKAYL
REDFFWAFTPAAGDFIRFRFFQPLRLERFFFRSGNIEHPEDKLFNTSVEVLPFDNPQSEKEALQEGRSAT
LRYPRSPDGYLQIGSFYKGVAEGEVDPAFGPLEALRLSIQTDSPVWVILSEIFLKKAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH