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Report for CCDS24631.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24631.1 Public Mus musculus 11 Ltc4s 23 108 98 CCDS HistoryNCBI Gene:17001Re-query CCDS DB by CCDS ID:24631.1Re-query CCDS DB by GeneID:17001See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24631.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102772.3 ENSMUSP00000099833.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102772.3Link to Ensembl Protein Viewer:ENSMUSP00000099833.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102772Re-query CCDS DB by Protein ID:ENSMUSP00000099833
Original member NCBI NM_008521.2 NP_032547.1 Updated not alive Link to Nucleotide Sequence:NM_008521.2Link to Protein Sequence:NP_032547.1Re-query CCDS DB by Nucleotide ID:NM_008521Re-query CCDS DB by Protein ID:NP_032547
Current member NCBI NM_008521.3 NP_032547.1 Accepted alive Link to Nucleotide Sequence:NM_008521.3Link to Protein Sequence:NP_032547.1Re-query CCDS DB by Nucleotide ID:NM_008521Re-query CCDS DB by Protein ID:NP_032547Link to BLAST:NP_032547.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032547.1 150 Q60860 150 100% 0 0

Chromosomal Locations for CCDS 24631.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50236571 50236712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50237017 50237098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50237194 50237264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50237341 50237440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50238378 50238435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGAAGGACGAAGTGGCTCTTCTGGCTACCGTCACCCTCGTGGGAGTTCTGTTGCAAGCCTACTTCTCCC
TACAGGTGATCTCTGCACGAAGGGCTTTCCACGTGTCGCCGCCGCTCACCTCTGGCCCTCCCGAGTTCGA
GCGCGTCTTCCGAGCCCAGGTAAACTGCAGCGAGTACTTTCCGCTGTTCCTCGCCACACTCTGGGTCGCC
GGCATCTTCTTCCACGAAGGAGCCGCAGCCCTGTGCGGACTGTTCTACCTGTTCGCGCGCCTCCGCTATT
TCCAGGGATACGCGCGCTCAGCGCAACTCAGGCTGACTCCCCTATACGCGAGCGCGCGCGCACTCTGGCT
GCTGGTGGCGATGGCTGCACTGGGCTTGCTAGTCCACTTCCTCCCCGGCACGCTACGGACTGCGCTCTTC
AGATGGCTCCAGATGCTCCTGCCGATGGCCTGA

Translation (150 aa):
MKDEVALLATVTLVGVLLQAYFSLQVISARRAFHVSPPLTSGPPEFERVFRAQVNCSEYFPLFLATLWVA
GIFFHEGAAALCGLFYLFARLRYFQGYARSAQLRLTPLYASARALWLLVAMAALGLLVHFLPGTLRTALF
RWLQMLLPMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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