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Report for CCDS24687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24687.1 Public Mus musculus 11 Slc22a5 23 108 98 CCDS HistoryNCBI Gene:20520Re-query CCDS DB by CCDS ID:24687.1Re-query CCDS DB by GeneID:20520See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019044.7 ENSMUSP00000019044.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019044.7Link to Ensembl Protein Viewer:ENSMUSP00000019044.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019044Re-query CCDS DB by Protein ID:ENSMUSP00000019044
Original member NCBI NM_011396.3 NP_035526.1 Updated not alive Link to Nucleotide Sequence:NM_011396.3Link to Protein Sequence:NP_035526.1Re-query CCDS DB by Nucleotide ID:NM_011396Re-query CCDS DB by Protein ID:NP_035526
Current member NCBI NM_011396.4 NP_035526.1 Accepted alive Link to Nucleotide Sequence:NM_011396.4Link to Protein Sequence:NP_035526.1Re-query CCDS DB by Nucleotide ID:NM_011396Re-query CCDS DB by Protein ID:NP_035526Link to BLAST:NP_035526.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035526.1 557 Q9Z0E8 557 100% 0 0

Chromosomal Locations for CCDS 24687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 53865809 53865896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53866237 53866372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53867523 53867705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53869222 53869436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53871568 53871668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53873668 53873794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53874935 53875106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53876009 53876163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53883661 53883764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53891147 53891539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGCGGGACTACGACGAGGTGACCGCCTTCCTAGGCGAGTGGGGGCCCTTCCAGCGCCTCATCTTCTTCC
TGCTCAGCGCCAGCATCATCCCCAATGGCTTCAATGGTATGTCCATCGTGTTCCTGGCGGGGACCCCGGA
GCACCGTTGCCTTGTGCCTCACACCGTGAACCTGAGCAGCGCGTGGCGCAACCACAGTATCCCGTTGGAG
ACGAAGGACGGACGACAGGTGCCTCAGAAATGCCGCCGCTACCGACTGGCCACCATCGCCAACTTCTCTG
AGCTAGGGCTGGAGCCGGGGCGGGACGTGGACCTGGAGCAGCTGGAGCAGGAGAGCTGCCTGGATGGCTG
GGAGTACGACAAGGACGTCTTCCTGTCCACCATCGTGACAGAGTGGGACCTGGTGTGTAAGGATGACTGG
AAAGCCCCACTCACCACCTCCTTGTTTTTCGTGGGTGTGCTGATGGGCTCCTTCATTTCAGGACAGCTCT
CAGACAGGTTTGGTCGCAAGAATGTGCTGTTTTTGACCATGGGCATGCAGACTGGCTTCAGCTTCCTGCA
GGTCTTCTCTGTGAACTTCGAGATGTTTACAGTGCTTTTTGTCCTTGTTGGCATGGGTCAGATCTCCAAC
TACGTGGCAGCATTTGTCCTGGGAACAGAAATTCTTTCCAAGTCAATTCGAATTATATTCGCCACCTTAG
GAGTTTGCATATTTTATGCGTTTGGCTTCATGGTGCTGCCACTGTTTGCATACTTCATCAGAGACTGGAG
GATGCTGCTGCTGGCGCTCACTGTGCCAGGGGTGCTATGTGGGGCTCTCTGGTGGTTCATCCCTGAGTCC
CCACGATGGCTCATCTCTCAAGGCCGAATTAAAGAGGCAGAGGTGATCATCCGCAAAGCTGCCAAAATCA
ATGGGATTGTTGCACCTTCCACTATCTTCGATCCAAGTGAGTTACAAGACTTAAATTCTACGAAGCCTCA
GTTGCACCACATTTATGATCTGATCCGAACACGGAATATCAGGGTCATCACCATCATGTCTATAATCCTG
TGGCTGACCATATCAGTGGGCTATTTTGGACTATCTCTTGACACTCCTAACTTGCATGGGGACATCTATG
TGAACTGCTTCCTACTGGCGGCTGTTGAAGTCCCAGCCTATGTGCTGGCCTGGCTGTTGTTGCAGTACTT
GCCCCGGCGATATTCTATCTCGGCTGCCCTTTTCCTGGGTGGCAGTGTCCTTCTCTTCATGCAGCTGGTG
CCTTCAGAATTGTTTTACTTGTCCACTGCCCTGGTGATGGTGGGGAAGTTTGGAATCACCTCTGCCTACT
CCATGGTCTATGTGTACACAGCTGAGCTGTACCCCACTGTGGTCAGAAACATGGGTGTGGGGGTCAGCTC
CACAGCATCCCGCCTTGGCAGCATCCTGTCTCCCTACTTTGTTTACCTAGGTGCCTATGATCGCTTCCTG
CCTTATATTCTCATGGGAAGTCTGACCATCCTGACAGCTATCCTCACCTTGTTCTTCCCTGAGAGCTTTG
GTGTCCCTCTCCCAGATACCATTGACCAGATGCTAAGGGTCAAAGGAATAAAACAGTGGCAAATCCAAAG
CCAGACAAGAATGCAAAAAGATGGTGAAGAAAGCCCAACAGTCCTAAAGAGCACAGCCTTCTAA

Translation (557 aa):
MRDYDEVTAFLGEWGPFQRLIFFLLSASIIPNGFNGMSIVFLAGTPEHRCLVPHTVNLSSAWRNHSIPLE
TKDGRQVPQKCRRYRLATIANFSELGLEPGRDVDLEQLEQESCLDGWEYDKDVFLSTIVTEWDLVCKDDW
KAPLTTSLFFVGVLMGSFISGQLSDRFGRKNVLFLTMGMQTGFSFLQVFSVNFEMFTVLFVLVGMGQISN
YVAAFVLGTEILSKSIRIIFATLGVCIFYAFGFMVLPLFAYFIRDWRMLLLALTVPGVLCGALWWFIPES
PRWLISQGRIKEAEVIIRKAAKINGIVAPSTIFDPSELQDLNSTKPQLHHIYDLIRTRNIRVITIMSIIL
WLTISVGYFGLSLDTPNLHGDIYVNCFLLAAVEVPAYVLAWLLLQYLPRRYSISAALFLGGSVLLFMQLV
PSELFYLSTALVMVGKFGITSAYSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRFL
PYILMGSLTILTAILTLFFPESFGVPLPDTIDQMLRVKGIKQWQIQSQTRMQKDGEESPTVLKSTAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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