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Report for CCDS24779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24779.1 Public Mus musculus 11 Nt5m 23 108 98 CCDS HistoryNCBI Gene:103850Re-query CCDS DB by CCDS ID:24779.1Re-query CCDS DB by GeneID:103850See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102695.3 ENSMUSP00000099756.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102695.3Link to Ensembl Protein Viewer:ENSMUSP00000099756.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102695Re-query CCDS DB by Protein ID:ENSMUSP00000099756
Original member NCBI NM_134029.2 NP_598790.1 Updated not alive Link to Nucleotide Sequence:NM_134029.2Link to Protein Sequence:NP_598790.1Re-query CCDS DB by Nucleotide ID:NM_134029Re-query CCDS DB by Protein ID:NP_598790
Current member NCBI NM_134029.3 NP_598790.1 Accepted alive Link to Nucleotide Sequence:NM_134029.3Link to Protein Sequence:NP_598790.1Re-query CCDS DB by Nucleotide ID:NM_134029Re-query CCDS DB by Protein ID:NP_598790Link to BLAST:NP_598790.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598790.1 220 Q8VCE6 220 100% 0 0

Chromosomal Locations for CCDS 24779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59848130 59848372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59852791 59852891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59860750 59860810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59874553 59874667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59875805 59875947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGCATAGGCTGCGCGGCTGCTGTGCGCGTCCCCGCGGTGCCCCGCTACGGGCCGAGCGGAGCCGGGCGA
GCAGCCGCGCCCTGCGGGTGCTGGTGGACATGGACGGCGTGCTGGCGGACTTTGAGGGCGGCTTCCTCCG
GAAGTTCCGCGCGCGTTTCCCCGACCTGCCCTTCGTGGCGCTGGAGGACCGGCGCGGCTTCTGGGTGTCG
GAGCAGTACGGACGGCTACAGCCTGGGCTAAGCGAGAAGGCGATCAGCATCTGGGAGTCAAAGGATTTCT
TCTTTGAACTTGAGCCTCTCCCTGGAGCCGTGGAAGCTGTGAAGCAGATGGCCAATCTACAGAACACTGA
TGTCTTCATCTGTACAAGCCCCATCAAGATGTTCAAGTACTGTCCCTATGAGAAGTATGCCTGGGTGGAG
AAGCACTTTGGCCCTGACTTTCTGGAGCAGATTGTGTTGACCAGAGACAAGACTGTGATCTCAGCCGACC
TTCTCATAGATGACCGGCCAGACATCACAGGGGCTGAGCCACATCCCAGCTGGGAGCACATCCTCTTTAC
CTCCTGCCACAACTACCACCTGCAGCTGCAGCCCCCTCGCCGCAGGCTGCACTCATGGGCAGACGACTGG
AAGGCCATCTTGGACAGCAAGCGGCTCCGCTGA

Translation (220 aa):
MHRLRGCCARPRGAPLRAERSRASSRALRVLVDMDGVLADFEGGFLRKFRARFPDLPFVALEDRRGFWVS
EQYGRLQPGLSEKAISIWESKDFFFELEPLPGAVEAVKQMANLQNTDVFICTSPIKMFKYCPYEKYAWVE
KHFGPDFLEQIVLTRDKTVISADLLIDDRPDITGAEPHPSWEHILFTSCHNYHLQLQPPRRRLHSWADDW
KAILDSKRLR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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