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Report for CCDS24782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24782.1 Public Mus musculus 11 Pemt 23 108 98 CCDS HistoryNCBI Gene:18618Re-query CCDS DB by CCDS ID:24782.1Re-query CCDS DB by GeneID:18618See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24782.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000310.13 ENSMUSP00000000310.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000310.13Link to Ensembl Protein Viewer:ENSMUSP00000000310.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000310Re-query CCDS DB by Protein ID:ENSMUSP00000000310
Original member Current member EBI ENSMUST00000102692.9 ENSMUSP00000099753.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102692.9Link to Ensembl Protein Viewer:ENSMUSP00000099753.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102692Re-query CCDS DB by Protein ID:ENSMUSP00000099753
Original member Current member NCBI NM_001290012.1 NP_001276941.1 Accepted alive Link to Nucleotide Sequence:NM_001290012.1Link to Protein Sequence:NP_001276941.1Re-query CCDS DB by Nucleotide ID:NM_001290012Re-query CCDS DB by Protein ID:NP_001276941Link to BLAST:NP_001276941.1
Original member Current member NCBI NM_001290013.1 NP_001276942.1 Accepted alive Link to Nucleotide Sequence:NM_001290013.1Link to Protein Sequence:NP_001276942.1Re-query CCDS DB by Nucleotide ID:NM_001290013Re-query CCDS DB by Protein ID:NP_001276942Link to BLAST:NP_001276942.1
Original member Current member NCBI NM_008819.3 NP_032845.2 Accepted alive Link to Nucleotide Sequence:NM_008819.3Link to Protein Sequence:NP_032845.2Re-query CCDS DB by Nucleotide ID:NM_008819Re-query CCDS DB by Protein ID:NP_032845Link to BLAST:NP_032845.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276941.1 199 Q61907-1 199 100% 0 0
NP_001276942.1 199 Q61907-1 199 100% 0 0
NP_032845.2 199 Q61907-1 199 100% 0 0

Chromosomal Locations for CCDS 24782.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59970818 59970875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59971184 59971258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59974068 59974179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59976839 59976984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59983443 59983558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60031713 60031805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGAGCTGGCTGCTGGGTTACATGGACCCCACAGAGCCCAGCTTTGTGGCGGCTGTGATCACCATTGTGT
TCAACCCACTCTTCTGGAATGTGGTAGCGAGATGGGAGCAGAGAACTCGGAAGCTGAGCAGAGCCTTCGG
CTCCCCCCACCTAGCCTGCTATTCCCTGGGCATCTGCATCCTGCTTTTGAACATCCTCCGCTCCCACTGC
TTCACACAGGCTATGATGAGCCAGCCCAAGATGGAGGGCCTGGACAACCACACCACCTACTTCCTGGGCC
TTGCATTCCTAGGTTGGGGATTCGTGTTTGTGCTGTCCAGCTTCTATGCACTGGGGTTCACTGGGACCTT
TCTAGGTGACTACTTTGGGATCCTCAAGGAGTCCAGAGTGACCACATTTCCCTTCAGCGTGCTGGATAAC
CCCATGTACTGGGGCAGTACAGCCAACTACCTAGGCTGGGCACTCATGCATGCTAGTCCCACAGGCCTGC
TGTTGACGGTGCTGGTGGCAATTGTCTACGTGGTTGCTCTCCTATATGAAGAGCCCTTCACTGCTGAGAT
CTACCGACAGAAAGCTACCAGGTTGCACAAAAGAAGCTGA

Translation (199 aa):
MSWLLGYMDPTEPSFVAAVITIVFNPLFWNVVARWEQRTRKLSRAFGSPHLACYSLGICILLLNILRSHC
FTQAMMSQPKMEGLDNHTTYFLGLAFLGWGFVFVLSSFYALGFTGTFLGDYFGILKESRVTTFPFSVLDN
PMYWGSTANYLGWALMHASPTGLLLTVLVAIVYVVALLYEEPFTAEIYRQKATRLHKRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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