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Report for CCDS24818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24818.1 Public Mus musculus 11 Slc5a10 23 108 98 CCDS HistoryNCBI Gene:109342Re-query CCDS DB by CCDS ID:24818.1Re-query CCDS DB by GeneID:109342See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24818.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051552.10 ENSMUSP00000054407.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051552.10Link to Ensembl Protein Viewer:ENSMUSP00000054407.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000051552Re-query CCDS DB by Protein ID:ENSMUSP00000054407
Original member Current member EBI ENSMUST00000148584.1 ENSMUSP00000114523.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148584.1Link to Ensembl Protein Viewer:ENSMUSP00000114523.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148584Re-query CCDS DB by Protein ID:ENSMUSP00000114523
Original member Current member NCBI NM_001033227.2 NP_001028399.1 Accepted alive Link to Nucleotide Sequence:NM_001033227.2Link to Protein Sequence:NP_001028399.1Re-query CCDS DB by Nucleotide ID:NM_001033227Re-query CCDS DB by Protein ID:NP_001028399Link to BLAST:NP_001028399.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028399.1 596 Q5SWY8 596 100% 0 0

Chromosomal Locations for CCDS 24818.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61673005 61673111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61673224 61673281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61673526 61673741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61673829 61673997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61676127 61676277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61678549 61678656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61704251 61704386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61707794 61707999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61709279 61709359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61709591 61709696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61715036 61715140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61715264 61715323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61715678 61715782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61716245 61716316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61719842 61719952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGGCTGGCAATTCCACTGGGGATGCCCATGTTCCAGGATCCCAGCTGAGTGTCACGGACATTATTGTCA
TCTCTGTCTATTTTGCCTTGAATGTGGCCGTGGGCATATGGTCGGCTTGTCGAGCCAACAAGAACACAGT
GAGCGGCTACTTCCTGGCGGGCCGGGACATGGCTTGGTGGCCGATCGGAGCCTCACTCTTTGCAAGCAGC
GAGGGCTCTGGCCTCTTCGTAGGATTGGCCGGCTCGGGTGCTGCCGGAGGCCTGGCTGTGGCTGGCTTTG
AGTGGAATGCCACATATGTGCTTTTGGCTCTGGCATGGGTGTTTGTACCCATCTACATATCTTCAGAGAT
CGTCACCTTGCCTGAATACATTCAGAAGCGCTTTGGTGGCCAGCGCATCCGCACGTACTTATCTGTCCTG
TCCCTGATGCTGTCTGTCTTCACCAAGATATCGATTGACCTGTACGCAGGAGCCCTGTTTGTCCACATCT
GCCTGGGCTGGAACTTCTACCTGTCCACCATCCTCACGCTCGCCATTACGGCCCTGTACACCATTGCAGG
GGGCCTGGCCACTGTGATATACACAGATGCCCTGCAGACAATCATCATGGTGGTGGGTGCTGTCATTTTG
GCAGTCAAAGCTTTCAACCAGATCGGTGGTTATGAGCAGCTGGAGGCGGCGTATGCCCAGGCCATCCCCT
CCAGGACCATCCCCAACACCACCTGCCACCTGCCGCGAGCAGACGCCATGCATATGTTCCGGGACCCTTC
CACAGGAGACCTCCCGTGGACTGGGATGACCTTTGGTCTGACCATCATGGCCACCTGGTACTGGTGCACT
GACCAGGTTATTGTGCAGCGGTCCCTGTCTGCCCGGAACTTGAACCATGCCAAGGCAGGCTCCATTCTAG
CCAGCTACCTGAAGATGCTTCCCATGGGCCTGATGATCATGCCAGGCATGATCAGCCGAGTACTGTTCCC
AGACGATGTGGGCTGTGTGGTACCATCCGAGTGTCTGCGAGCCTGTGGGGCTGAGATTGGCTGCTCCAAC
ATTGCCTACCCGAAGCTGGTCATGGAGCTGATGCCCATAGGTCTTCGAGGGCTGATGATCGCAGTAATGA
TGGCTGCTCTCCTGTCATCCCTGACCTCCATCTTCAACAGCAGCAGCACGCTTTTCACCATGGACATCTG
GAGGCAGCTTCGGCCCAGCGCGGGGGAGCGAGAGTTGCTGCTGGTGGGACGGCTGGTCATCGTGGTGCTC
ATCGGTGTGAGTGTAGCCTGGATCCCGGTCCTGCAGGGCTCTAACAGTGGTCAGCTTTTCATCTACATGC
AGTCAGTGACCAGCTCGCTGGCGCCCCCTGTCACCGCCATCTTCATCCTGGGCATCTTCTGGAGGAGGGC
CAATGAACAGGGGGCCTTCTGGGGCCTGATGGCTGGGCTGGTGGTGGGTGCTCTGAGGCTGGTCCTGGAA
TTCCTGTACCCGGAGCCCCCGTGCGGCCAAATCGATACCCGGCCAGCCCCCCTCCGCAGCCTACATTACT
TGCACTTTGCCATTGCCCTCTTCCTCCTCACCTGTGCTGTGATGGCCGCTGGGAGCCTACTGAGCCCGCC
CCCTCAGCAAAGACAGATTGAAAACCTCACCTGGTGGACTCTGGCTCCAAACTGGTCCTTAGGAACTAAA
ACAGGTGATGGCCAAACACCCCAGAAACGTGCTTTCTGGGCCCGCGTGTGTAATGTCAACGCCATCTTCC
TCATGTGTGTCAACATTTTCTTCTATGCCTATTTTGCCTGA

Translation (596 aa):
MAGNSTGDAHVPGSQLSVTDIIVISVYFALNVAVGIWSACRANKNTVSGYFLAGRDMAWWPIGASLFASS
EGSGLFVGLAGSGAAGGLAVAGFEWNATYVLLALAWVFVPIYISSEIVTLPEYIQKRFGGQRIRTYLSVL
SLMLSVFTKISIDLYAGALFVHICLGWNFYLSTILTLAITALYTIAGGLATVIYTDALQTIIMVVGAVIL
AVKAFNQIGGYEQLEAAYAQAIPSRTIPNTTCHLPRADAMHMFRDPSTGDLPWTGMTFGLTIMATWYWCT
DQVIVQRSLSARNLNHAKAGSILASYLKMLPMGLMIMPGMISRVLFPDDVGCVVPSECLRACGAEIGCSN
IAYPKLVMELMPIGLRGLMIAVMMAALLSSLTSIFNSSSTLFTMDIWRQLRPSAGERELLLVGRLVIVVL
IGVSVAWIPVLQGSNSGQLFIYMQSVTSSLAPPVTAIFILGIFWRRANEQGAFWGLMAGLVVGALRLVLE
FLYPEPPCGQIDTRPAPLRSLHYLHFAIALFLLTCAVMAAGSLLSPPPQQRQIENLTWWTLAPNWSLGTK
TGDGQTPQKRAFWARVCNVNAIFLMCVNIFFYAYFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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