CCDS Report for Consensus CDS

PubMed

Entrez

Gene

BLAST

OMIM

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Genome Displays

	Ensembl
	NCBI
	UCSC
	VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24865.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
24865.1	Public	Mus musculus	11	Pik3r5	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24865.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000021283.7	ENSMUSP00000021283.7	Accepted	alive
		NCBI	NM_177320.2	NP_796294.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_796294.2	871	Q5SW28	871	100%	0	0

Chromosomal Locations for CCDS 24865.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)

Genome Browser links:

Chromosome	Start	Stop
11	68473808	68473910
11	68475403	68475503
11	68476305	68476373
11	68477444	68477582
11	68486551	68486620
11	68490472	68490646
11	68490789	68490942
11	68491947	68492030
11	68492252	68492951
11	68493076	68493238
11	68493542	68493667
11	68494155	68494283
11	68494462	68494555
11	68494782	68494858
11	68495175	68495268
11	68495348	68495430
11	68495908	68496020
11	68496109	68496250

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2616 nt):
ATGCAGCCAGCAGCCACAACGTGCACAGAGGACCGCATCCAGCATGCTCTGGAGCGATGCTTGCATGGAC TGAGCCTCGGACGCCGTTCTGCTCCCTGGTCAGCCGGGCTGTGTCTGAACTGCTGGAGCCTACAGGAGCT GGTCAGCAGGGACCCGGGCCACTTCCTCATCCTCCTGGAACAGATCCTACAAAAGACCCAAGAGGTCCAA GAGAAAGGCACCTATGACCTCCTCGCCCCGCTGGCTCTGCTCTTCTATTCCACTGTCCTCTGTACACCAC ACTTCCCACCAGACTCCGACCTCCTGCTGAAGGCAGCCAGCACCTACCACTGCTTCCTGACCTGGCCAGT TCCCTACTGCAGCATCTGCAGAGAGATGCTCACCTTCATTGATGCTGAACTCAAGGCCCCAGGAATCTCC TACCAGCGGCTGGTGAGGGCTGAGCAGGGCCTGCCCGTCAGGAGCCACCGAAGTTCCACTGTCACTGTGC TGTTGCTGAACCCGGTAGAGGTACAGGCTGAATTCCTTGCTGTGGCAGACAAGCTGAGCACGCCTGGACA GTCACCCCACGGCACCTACACCACCCTGCTCCTGCATGCCTTCCAGGCCACCTTTGGGGCCCACTGCGAC CTTCCTAAACTACACCGCAAACTTCAGTCCAAGACAATAGAAGAGCTGGAGGACATCTTCACCGAGACGA CAGAAGCCCAGGAGCTGGCGTCTGGCATTGGGGATGTAGCAGAGGCCCGAGAGTGGCTCCGGACCAAGCT GCAGGCAGTGGGAGAAAAAGCGGGCTTCCCTGGCATCTTAGACACTGCAAGCCCTGGGAAACTCCACACC ATCCCCATCCCTGTCGCCAGATGCTACACCTACAGCTGGAACCAGGACAGCTTTGACATCCTACAGGAAG TCCTTCTCAAGGAACAGGAGCTGCTGCAGCCAGGGATCTTGGGAGATGATGAAGAGGAGGAAGAGGAGGA CTTGGAGATGGACAGGCATTGCGCTGAGAGGGACTCTCTCCTCTCCACCAGCTCCCTGGTGTCTCACGAC TCCACACTGTTGCTCACCTCCTCTCAGGCCTCAGAACCGGTGCTGTCCCGCCAGATGCTGACCACCTTTG TCTCAGGCCTCTCGGATGGCATGGACAGTGGCTACGTGGAGGACAGCGAGGAAAACTCAGAGTGGCCCCA AAAGCCCGGCAGCCAGAAACGCCAGGGTCATCGCAGGCCTGGGCAGAAGTTCAACAGGTTCTATAAACTC TTAAAGAGCACCAGCCAGTTAGTCCTGAGGAGGGACTCTCGGAGCCTGGAGAGCAGTGTAGACCCAACCC TGCCTCTGCGAAGGGCTGGGAGCCTCTGCAGCCCCTTGGACTGTCCCGCTCAGCTCCCCTCCCGGGCTCA GCGCTCACGGTCCTTGCCTCAGGCCAAGCTCACCACCCAACTCCCCAGATGGCTTCTGGCACCACCCTCA CACCACCAGCGCCGCCGTCCCTTCCTCAGTGGGGATGAGGACCCCAAAGCTTCCACACTACGGGTTGTGG TCTTTGGCTCTGATCGGATTTCAGGGAAGGTGGCTAGGGCCTATAGCAAGCTCAGGAGGCTGGAGACCAG TCACCCTATCCTCACACGCTTCTTCAAGCTTCAGTTCTTCTATGTGCCTGTGAAGAGAAGCCACGGAACC AGCCCCAGTGCCTGCCCATCCTCTCTGAGCCAAGCATCTCCACTCCCTGCAGACTCCCTGAAGTACCCCA GCCCTACAGACCTTGGCATGGCCCCATGGGAGGACAGTACCAATGACATCTCTCACTACCTCGGTATGCT TGACCCCTGGTACGAACGCAATGTGTTGGGCCTCATGCACCTGCCTCCTGAAGTCCTTTGTCAGCAGTCC CTGAAGGCAGACTCTCGGCCCCTGGAGGGATCGGCCACCCAGCTGCCCATCCTGGCCGATATGTTACTCT ACTACTGCCGCTTTGCGGCCCGCCCCGTGTTGCTGCAGGTTTACCAGACAGAGCTGACCTTTGTCACCGG GGAGAAGACCACAGAGATCTTCATCCAGTCTCTGGAGCTGGGTCACTCTGCGACCACTCGGGCTATCAAG GCTTCAGGTCGGGGTAGGAAGAGGCTGGGCATTGATGACGACCGGGAGGCCGTCCCTCTAACACTACAGA TTATTTACAGCAAGGGAGCCATCAGTGGGCGAAGCCGCTGGAGCAACCTGGAGAAGGTCTGCACCTCTGT TAACCTCAGCAAGGCCTGCCAGAAGCCGGAGGAGCTAGACTCCAGCATGGAGGCGCTAACGCTAACCCTG ACAGAAGTGGTGAAGAGGCAGAACCCTAAATCCAAAAAGGGCTTTAACCAGATCAGTACATCCTACATCA AAGTGGACAAGGTGCAGATCATCGGCTCTAGCAGCTGCCCCTTTGCCGTGTGTCTAGACCAGGATGAGAG AAAGATCCTGCAGAGTGTGGTCAGGTGTGAAGTGTCACCCTGCTACAAGCCAGAGAAGAGCAGCTTGCCA CCCGAGAGGTCCTTCAGCCAGCCAGCAGAGACTGGGTCCGACCTGTGCTCCCTTCTCTGCCTTCCCATCA TGACATTCAGTGGGGCTCTGCCCTAG
Translation (871 aa):
MQPAATTCTEDRIQHALERCLHGLSLGRRSAPWSAGLCLNCWSLQELVSRDPGHFLILLEQILQKTQEVQ EKGTYDLLAPLALLFYSTVLCTPHFPPDSDLLLKAASTYHCFLTWPVPYCSICREMLTFIDAELKAPGIS YQRLVRAEQGLPVRSHRSSTVTVLLLNPVEVQAEFLAVADKLSTPGQSPHGTYTTLLLHAFQATFGAHCD LPKLHRKLQSKTIEELEDIFTETTEAQELASGIGDVAEAREWLRTKLQAVGEKAGFPGILDTASPGKLHT IPIPVARCYTYSWNQDSFDILQEVLLKEQELLQPGILGDDEEEEEEDLEMDRHCAERDSLLSTSSLVSHD STLLLTSSQASEPVLSRQMLTTFVSGLSDGMDSGYVEDSEENSEWPQKPGSQKRQGHRRPGQKFNRFYKL LKSTSQLVLRRDSRSLESSVDPTLPLRRAGSLCSPLDCPAQLPSRAQRSRSLPQAKLTTQLPRWLLAPPS HHQRRRPFLSGDEDPKASTLRVVVFGSDRISGKVARAYSKLRRLETSHPILTRFFKLQFFYVPVKRSHGT SPSACPSSLSQASPLPADSLKYPSPTDLGMAPWEDSTNDISHYLGMLDPWYERNVLGLMHLPPEVLCQQS LKADSRPLEGSATQLPILADMLLYYCRFAARPVLLQVYQTELTFVTGEKTTEIFIQSLELGHSATTRAIK ASGRGRKRLGIDDDREAVPLTLQIIYSKGAISGRSRWSNLEKVCTSVNLSKACQKPEELDSSMEALTLTL TEVVKRQNPKSKKGFNQISTSYIKVDKVQIIGSSSCPFAVCLDQDERKILQSVVRCEVSPCYKPEKSSLP PERSFSQPAETGSDLCSLLCLPIMTFSGALP

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH