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Report for CCDS25220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25220.1 Public Mus musculus 11 Epx 23 108 98 CCDS HistoryNCBI Gene:13861Re-query CCDS DB by CCDS ID:25220.1Re-query CCDS DB by GeneID:13861See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049768.3 ENSMUSP00000050497.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049768.3Link to Ensembl Protein Viewer:ENSMUSP00000050497.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000049768Re-query CCDS DB by Protein ID:ENSMUSP00000050497
Original member Current member NCBI NM_007946.2 NP_031972.2 Accepted alive Link to Nucleotide Sequence:NM_007946.2Link to Protein Sequence:NP_031972.2Re-query CCDS DB by Nucleotide ID:NM_007946Re-query CCDS DB by Protein ID:NP_031972Link to BLAST:NP_031972.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031972.2 716 P49290 716 100% 0 0

Chromosomal Locations for CCDS 25220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87864706 87864907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87865405 87865642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87868551 87868721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87869247 87869502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87869821 87869981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87871301 87871619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87872589 87872795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87874273 87874402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87874487 87874604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87874783 87874958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87875122 87875215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87875336 87875414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGATGCAGCAGCTTCTGGCCCTGGTAGGGGCCTTAGCCACACTCATCCTCACCCAACACGCTGAAGGCA
CTGCCCCAGCTTCCCCCAGTCCAGTGGAGATTTCAGTCCTTCGAGACTGCATAGCAGAGGCTAAGCTGCT
GGTGGACACTGCCTACAATCACACACAGAAAAGCATCATGCAACGTCTTCGCAGTGGCTCGGCCAGCCCC
ATGGACCTCCTGGCCTACTTCAAACAGCCAGTAGCAGCCACCAGAAGAGTGGTTCAGGCCGCTGATTATA
TGCATGTGGCCTTAGGGCTGCTAGAAGAGAGGCTGCAGCCACGGGGATCTAGACCCTTCAATGCCACTGA
TGTGCTCACAGAACCACAGCTGCGCCTGCTGTCCCAGGCCAGTGGCTGTGCTCTCCAGGACCAGGCTGAG
AGGTGCAGCAACAAGTACCGAACCATAACAGGGAGATGCAACAACAAGAAGCATCCCTGGCTGGGAGCCT
CCAACCAGGCCCTGGCCCGCTGGCTGCCAGCTGAGTATGAAGACCACAGGTCTCTCCCCTTTGGCTGGAC
CCCTGGAAAGAGGCGTAATGGCTTCCTGCTTCCTCTTGTCCGGGATGTCTCCAATCAGATTGTGCGCTTC
CCCAGCAAGAAACTGACCTCAGACCGCGGCCGGGCCCTTATGTTCATGCAGTGGGGCCAGTTCATCGACC
ATGACCTGGACTTCTCCCCGGAGTCCCCAGCCAGAGTGGCCTTCAGCATGGGTGTGGACTGTGAGAAGAC
CTGTGCCCAGCTGCCCCCCTGCTTCCCCATCAAGATCCCACGCAATGATCCCCGCATCAAGAACCAGCGC
GACTGCATCCCCTTCTTCCGCTCTGCCCCGGCGTGCCCCCAAAACAGGAACAAAGTCCGCAACCAGATCA
ACGCACTTACATCCTTCGTGGACGCCAGCATGGTGTATGGCAGCGAGGTGACCCTCGCCCTGCGGCTCCG
TAATAGGACCAACTTCCTGGGGCTGCTGGCCACGAACCAGCGATTCCAGGACAACGGTCGAGCCCTACTG
CCTTTTGACAACCTGCATGAGGACCCCTGTCTCCTGACTAACCGCTCTGCACGCATCCCCTGCTTCCTGG
CAGGTGACACTCGGTCAAGTGAAACCCCCAAACTGACGGCCTTGCACACGCTGTTTGTGAGAGAACACAA
TCGCCTAGCCGCTGAGCTGAGGCGCCTGAATCCCCACTGGAGTGGAGACAAGCTGTACAACGAAGCCCGG
AAGATCGTGGGAGCCATGGTCCAGATCATCACCTACCGAGACTTCCTGCCTCTGGTTCTGGGCAGGGCCC
GGATCAGAAGAACTTTGGGTCCCTACAGAGGGTATTGCTCCAATGTGGACCCCCGTGTAGCCAATGTTTT
CACCCTGGCCTTCCGCTTTGGCCACACCATGCTTCAGCCCTTCATGTTCCGCCTGGATAGCCAGTATCGG
GCCTCGGCACCCAACTCCCACGTCCCGCTTAGCTCTGTATTCTTTGCCAGCTGGCGAATCATACATGAAG
GTGGCATCGACCCTATCCTCCGAGGTCTCATGGCCACCCCAGCTAAGCTGAACCGGCAGGATTCCATGCT
GGTGGATGAGCTCCGCGACAAGCTGTTTCAGCAAGTGAGAAGGATCGGGCTGGATCTGGCAGCTCTGAAC
ATGCAGCGCAGCCGGGACCACGGCCTTCCAGGATACAATGCCTGGAGACGCTTCTGTGGGCTTTCCCAGC
CCCGAAACTTGGCCCAGCTTAGTCGGGTGCTAAAAAATCAGGATTTGGCAAGGAAGTTTCTGAGACTGTA
CAAGACGCCCGACAACATTGACATCTGGGTCGGAGCCATTGCGGAGCCTCTCCTGCCGGGGGCCCGAGTG
GGGCCGCTTCTGGCTTGTCTTTTTGAGAACCAGTTCAGGAGAGCCAGAGATGGAGACAGATTCTGGTGGC
AGAAATGGGGAGTTTTCACCAAAAGACAACGCAAAGCCCTGAGGCGAATCTCTTTATCTCGGATTGTATG
CGACAATACTGGCATCACCACGGTTTCGAGGGACATCTTCAGGGCTAACATCTACCCACAGGGTTTTGTG
AGCTGTAGCCGTATTCCCAAGTTGAACCTATCAGCCTGGCGAGGCAAATGA

Translation (716 aa):
MMQQLLALVGALATLILTQHAEGTAPASPSPVEISVLRDCIAEAKLLVDTAYNHTQKSIMQRLRSGSASP
MDLLAYFKQPVAATRRVVQAADYMHVALGLLEERLQPRGSRPFNATDVLTEPQLRLLSQASGCALQDQAE
RCSNKYRTITGRCNNKKHPWLGASNQALARWLPAEYEDHRSLPFGWTPGKRRNGFLLPLVRDVSNQIVRF
PSKKLTSDRGRALMFMQWGQFIDHDLDFSPESPARVAFSMGVDCEKTCAQLPPCFPIKIPRNDPRIKNQR
DCIPFFRSAPACPQNRNKVRNQINALTSFVDASMVYGSEVTLALRLRNRTNFLGLLATNQRFQDNGRALL
PFDNLHEDPCLLTNRSARIPCFLAGDTRSSETPKLTALHTLFVREHNRLAAELRRLNPHWSGDKLYNEAR
KIVGAMVQIITYRDFLPLVLGRARIRRTLGPYRGYCSNVDPRVANVFTLAFRFGHTMLQPFMFRLDSQYR
ASAPNSHVPLSSVFFASWRIIHEGGIDPILRGLMATPAKLNRQDSMLVDELRDKLFQQVRRIGLDLAALN
MQRSRDHGLPGYNAWRRFCGLSQPRNLAQLSRVLKNQDLARKFLRLYKTPDNIDIWVGAIAEPLLPGARV
GPLLACLFENQFRRARDGDRFWWQKWGVFTKRQRKALRRISLSRIVCDNTGITTVSRDIFRANIYPQGFV
SCSRIPKLNLSAWRGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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