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Report for CCDS25488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25488.1 Public Mus musculus 11 Nags 23 108 98 CCDS HistoryNCBI Gene:217214Re-query CCDS DB by CCDS ID:25488.1Re-query CCDS DB by GeneID:217214See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055409.5 ENSMUSP00000050258.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055409.5Link to Ensembl Protein Viewer:ENSMUSP00000050258.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055409Re-query CCDS DB by Protein ID:ENSMUSP00000050258
Original member Current member NCBI NM_145829.2 NP_665828.1 Accepted alive Link to Nucleotide Sequence:NM_145829.2Link to Protein Sequence:NP_665828.1Re-query CCDS DB by Nucleotide ID:NM_145829Re-query CCDS DB by Protein ID:NP_665828Link to BLAST:NP_665828.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665828.1 527 Q8R4H7-1 527 100% 0 0

Chromosomal Locations for CCDS 25488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102145587 102145991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102146490 102146764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102146863 102147076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102147364 102147544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102147810 102147981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102148092 102148274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102148918 102149071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGCGACGGCGTGGGTGGCCACAGCCCTGCGGTCTGCTGCAGCGGCCAGAAGGTTGCGCAGCCCGGGAG
GT
CCTGGGGGCTCACGGAGACTGAGTGGCAGCGCGCGGCGGCGCGGGGCAAAGAGCGCCAGCCCGGGACG
C
CGGCTCAGCACCGCCAGGGCTCACGCAGAGGACGCCGAGGGCGCTAAGGGTCGTGTCCAGTCTCCTGCG
GTC
GAGGAGCCGTCGTGGACACCGCTTCCAACGCCCCTCGAATCCCCTGCGCCTCCCGCCGGCAGATCAC
TG
GTGCAGCGGGACATCCAGGCCTTCCTGAACCAGTGTGGTGCCAGCCCGGGGGAAGCACGCCACTGGCT
C
ACGCAATTCCAGACCTGCTACCATTCGGTGGACAAGCCCTTCGCCGTCATGGAGGTCGATGAGGAGGTG
ATC
CGGTGCCCGCAGGCGGTATCCCGCCTGGCTTTCGCCCTGGCCTTCTTGCAACGCATGGACATGAAGC
CA
CTGGTGGTTCTGGGGCTGCCTACCCCCACGGCACCTTCTGGCTGTCTTTCCTTCTGGGAAGCTAAGGC
G
CAGCTTGCTCAGAGCTGCAAGGTGCTGGTGGATGAACTAAGGCACAACGCGGCTACTGCTGTGCCCTTT
TTT
GGCGGCGGATCAGTACTGAGCGCTGCGGAGCCAGCTCCCCATGCCAGCTACGGTGGCATCGTCGCGG
TG
GAGACAGACCTGTTGCAGTGGTGTCTGGAATCCAACAGCATCCCCATCCTGTGCCCCATTGGGGAAAC
G
GCTGCGCGCCGTTCCGTGCTCCTTGACTCGCTGGAGGTGACTGCATCTCTAGCCAAGGCTTTGCAGCCC
ACC
AAAATCATCTTCCTCAATAATTCAGGCGGCCTGCGGAATAACAGTCAGAAGATCCTGAGCAACGTGA
AC
CTGCCCGCTGACCTTGACCTTGTTACCAACGCTGAGTGGCTGAGCATCAAAGAGCGGCAGCAGATTCG
G
CTCATCGTGGACGTGCTGAGCCGCCTGCCGCACTACTCCTCCGCAGTCATTACAGCCGCTAGCACGCTG
CTC
ACGGAACTCTTTAGTAACAAGGGCTGTGGCACCCTGTTTAAAAATGCTGAGCGGATGCTGCGAGTGC
GC
AACCTGGACAGCCTGGACCAGGGCCGCCTAGTGAACCTAGTCAACGCCAGCTTCGGCAAGAAGCTCCG
A
GAAGACTATCTGGAGTCACTGCGCCCTCGGTTGCACTCGATCTATGTCTCTGAGGGGTACAACGCGGCA
GCC
ATTCTGACAGTGGAACCTGTACTAGGGGGCACCCCATATCTGGACAAATTTGTGGTGAGCTCCAGCC
GC
CAGGGCCAAGGTTCTGGACAGATGCTGTGGGAATGCCTTCGGAGAGACCTGCAAACGTTGTTCTGGCG
C
TCAAGGGTCACCAATCCCATCAATCCCTGGTACTTCAAGCACAGTGACGGTAGCTTCTCCAACAAGCAG
TGG
ATCTTCTTCTGGTTCGGCCTGGCCGACATCCGAGACTCCTACGAACTAGTCAATCATGCCAAGGGGC
TG
CCGGACTCTTTCTGCAAACCAGCTTCTGACCCAGGCAGCTGA


Translation (527 aa):
MATAWVATALRSAAAARRLRSPGGPGGSRRLSGSARRRGAKSASPGRRLSTARAHAEDAEGAKGRVQSPA
V
EEPSWTPLPTPLESPAPPAGRSLVQRDIQAFLNQCGASPGEARHWLTQFQTCYHSVDKPFAVME
VDEEV
I
RCPQAVSRLAFALAFLQRMDMKPLVVLGLPTPTAPSGCLSFWEAKAQLAQSCKVLVDELRHNAATAVPF
F
GGGSVLSAAEPAPHA
SYGGIVAVETDLLQWCLESNSIPILCPIGETAARRSVLLDSLEVTASLAKALQP
T
KIIFLNNSGGLRNNSQK
ILSNVNLPADLDLVTNAEWLSIKERQQIRLIVDVLSRLPHYSSAVITAASTL
L
TELFSNK
GCGTLFKNAERMLRVRNLDSLDQGRLVNLVNASFGKKLREDYLESLRPRLHSIYVSEGYNAA
A
ILTVEPVLGGTPYLDKFVVSSSRQGQGSGQMLWECLRRDLQTLFWRSRVTNPINP
WYFKHSDGSFSNKQ
W
IFFWFGLADIRDSYELVNHAKGLPDSFCKPASDPGS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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