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Report for CCDS25512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25512.1 Public Mus musculus 11 Plcd3 23 108 98 CCDS HistoryNCBI Gene:72469Re-query CCDS DB by CCDS ID:25512.1Re-query CCDS DB by GeneID:72469See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103077.1 ENSMUSP00000099366.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103077.1Link to Ensembl Protein Viewer:ENSMUSP00000099366.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103077Re-query CCDS DB by Protein ID:ENSMUSP00000099366
Original member Current member NCBI NM_152813.3 NP_690026.2 Accepted alive Link to Nucleotide Sequence:NM_152813.3Link to Protein Sequence:NP_690026.2Re-query CCDS DB by Nucleotide ID:NM_152813Re-query CCDS DB by Protein ID:NP_690026Link to BLAST:NP_690026.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690026.2 785 Q8K2J0 785 100% 0 0

Chromosomal Locations for CCDS 25512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 103070841 103070929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103071010 103071159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103071255 103071390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103071641 103071807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103073728 103073844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103074559 103074709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103074857 103075003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103076714 103076866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103077482 103077626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103077761 103077962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103078239 103078467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103079540 103079669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103080187 103080415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103080504 103080665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103101380 103101530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2358 nt):
ATGCTGTGCGGTGGCTGGAAAAGGAGTCGCCGCTCGCCGGAGGAATCCCGGGTGTCCGCCCAGGTCGCAG
CGCCCCTCGCGTTCCCGCCCTCGCCCGCGTCGTCGGACAGCAGCACCAAAAGGCCTGGGCTACGGGCACT
GAAGAAGATGGGCCTGACGGAGGATGAGGATGTCCAAGCCATGCTGCGGGGCTCCCGACTCCTCAAGATC
CGCTCACGCACGTGGCACAAGGAGCGGCTGTACCGGCTGCAGGAGGACGGCCTGAGCGTGTGGTTTCAGC
GGCGCATCCCTCGCGCAGCTTCTAAGCACATATTCTTCGTGCAGCACATCGAGGCTGTCCGGGAGGGTCA
TCAGTCGGAGGGCCTGCGGCGCTTCGGGGGCGCCTTCGCGCCAGCGTGCTGCCTCACCATCGCCTTCAAG
GGCCGCCGCAAGAACCTGGACCTGGCAGCGCCCACTGCGGAGGAGGCACAGCGCTGGGTGCGAGGACTGG
CCAAGCTGCGGGCGCGCCTGGATGCCATGAGCCAGCGGGAGCGCCTAGACCATTGGATCCATTCCTATCT
GCACCGGGCCGACTCCGACCAAGACAGTAAGATGAGCTTCAAGGAGATCAAGAGCCTGCTGAGGATGGTG
AACGTGGACATGAACGACATGTACGCTTACCGCCTCTTCAAGGAGTGTGACCATTCCAACAACGAGCGTC
TAGAGGGGGCCGAGATAGAGGCGTTCCTGCGGAGGCTGCTAAAGCGGCCTGAGCTGGAGGAGATCTTCCG
CCGGTACTCCGGTGAGGACCGGGTGCTGAGTGCCTCTGAGCTGCTGGAGTTCCTGGAAGACCAGGGCGAG
GATGGTGCCACCCTGGCCTGTGCCCAGCAGCTTATCCAGACTTATGAGCTCAATGAGACAGCCAAGCAGC
ACGAACTGATGACGCTGGATGGCTTCATGATGTATCTGTTGTCGCCTGAGGGGGCCGCCCTGAACGTGGC
CCACACGTGTGTGTTCCAGGACATGGGTCAGCCCCTCGCCCACTACTTTATCTCGTCCTCTCACAATACC
TACCTGACGGACTCTCAGATCGGAGGGACCAGCAGCACAGAGGCTTATATTAGGGCCTTTGCCCAGGGAT
GCCGCTGTGTGGAACTTGACTGCTGGGAGGGGCCGGGAGGGGAACCTGTCATCTACCATGGCCACACGCT
CACCTCCAAGATCCTCTTTCGAGATGTGATCCAGGCTGTGCGTGACCACGCTTTCACGTCGTCCCCATAT
CCTGTAATCCTATCCCTCGAGAACCACTGCGGGCTGGAACAGCAGGCTGTCATGGCTCGCCACCTTCGAA
GCATCCTGGGAGACATGCTGGTGACACAGGCCCTGGACTCCCAGAACCCCGAGGAGCTGCCATCTCCTGA
GCAGCTCAAGGGCCGGATCTTGGTGAAGGGGAAGAAGCTGCCAGCTGCTCGGAGTGAGGATGGTCGAATT
CTGTCAGACAGGGAGGAGGAAGAGGAGGAGGAAGAGGAGGCGGAAGAGGCCTTGGAAGCTGCAGAGCAGA
GGAGTCGAGCCAAGCAGATCTCCCCAGAGCTCTCAGCGCTGGCTGTGTATTGCTGTGCTACCCGCCTGCG
GACCCTGGATCCCAGTCCTGGCCCGCCTCAGTCTTGCACGGTTGGCTCCCTCAGCGAGCGCAAGGCCAGG
AAGTTCACCAGGGAGGCAGGGACCAGCTTTGTCAGGCACAACACTCAGCAACTGACCCGAGTGTACCCAC
TGGGGCTGCGGATGAACTCAGCCAACTATAACCCCCAGGAGATGTGGAACTCCGGCTGTCAGCTGGTGGC
TCTGAACTTTCAGACTCCTGGTTATGAGATGGACCTCAACACAGGGCGCTTCCTCATAAACGGGCAATGT
GGCTACGTCCTCAAACCTGCTTACCTCAGGCAACTCAACACCACCTTTGACCCTGAGTGCCCTGGACCCC
CCAGAACTACTCTGGCAATCCAGGTGTTAACGGCCCAGCAGCTACCCAAGCTGAACGCAGAGAAGCCCAG
CTCCATTGTGGATCCTCTGGTGCGCGTGGAGATCCACGGGGTGCCCGAAGACTGTGCCCAGAAGGAGACA
GACTACGTCCTCAACAATGGCTTCAACCCCTGCTGGGAGCAGACTCTGCAGTTCCGACTGCGGGCCCCAG
AGCTGGTGCTGGTCAGGTTTGTGGTAGAAGATTATGACACCACCTCTCCCAATGATTTTGTGGGCCAGTC
TACACTGCCTCTCAGCAGCCTGAAGCAAGGGTACCGCCACATCCACCTGCTGTCCAAGGATGGAGCCTCG
CTCGCTCCAGCCACGCTCTTCGTGCACATCCGCATTCAGAACTCTTGA

Translation (785 aa):
MLCGGWKRSRRSPEESRVSAQVAAPLAFPPSPASSDSSTKRPGLRALKKMGLTEDEDVQAMLRGSRLLKI
RSRTWHKERLYRLQEDGLSVWFQRRIPRAASKHIFFVQHIEAVREGHQSEGLRRFGGAFAPACCLTIAFK
GRRKNLDLAAPTAEEAQRWVRGLAKLRARLDAMSQRERLDHWIHSYLHRADSDQDSKMSFKEIKSLLRMV
NVDMNDMYAYRLFKECDHSNNERLEGAEIEAFLRRLLKRPELEEIFRRYSGEDRVLSASELLEFLEDQGE
DGATLACAQQLIQTYELNETAKQHELMTLDGFMMYLLSPEGAALNVAHTCVFQDMGQPLAHYFISSSHNT
YLTDSQIGGTSSTEAYIRAFAQGCRCVELDCWEGPGGEPVIYHGHTLTSKILFRDVIQAVRDHAFTSSPY
PVILSLENHCGLEQQAVMARHLRSILGDMLVTQALDSQNPEELPSPEQLKGRILVKGKKLPAARSEDGRI
LSDREEEEEEEEEAEEALEAAEQRSRAKQISPELSALAVYCCATRLRTLDPSPGPPQSCTVGSLSERKAR
KFTREAGTSFVRHNTQQLTRVYPLGLRMNSANYNPQEMWNSGCQLVALNFQTPGYEMDLNTGRFLINGQC
GYVLKPAYLRQLNTTFDPECPGPPRTTLAIQVLTAQQLPKLNAEKPSSIVDPLVRVEIHGVPEDCAQKET
DYVLNNGFNPCWEQTLQFRLRAPELVLVRFVVEDYDTTSPNDFVGQSTLPLSSLKQGYRHIHLLSKDGAS
LAPATLFVHIRIQNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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