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Report for CCDS25827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25827.1 Public Mus musculus 12 Atp6v1c2 23 108 98 CCDS HistoryNCBI Gene:68775Re-query CCDS DB by CCDS ID:25827.1Re-query CCDS DB by GeneID:68775See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25827.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095820.11 ENSMUSP00000093500.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095820.11Link to Ensembl Protein Viewer:ENSMUSP00000093500.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000095820Re-query CCDS DB by Protein ID:ENSMUSP00000093500
Original member Current member NCBI NM_133699.2 NP_598460.1 Accepted alive Link to Nucleotide Sequence:NM_133699.2Link to Protein Sequence:NP_598460.1Re-query CCDS DB by Nucleotide ID:NM_133699Re-query CCDS DB by Protein ID:NP_598460Link to BLAST:NP_598460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598460.1 427 Q99L60-1 427 100% 0 0

Chromosomal Locations for CCDS 25827.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 17284859 17284948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17285113 17285245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17288083 17288180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17288996 17289133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17291429 17291522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17291628 17291720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17294145 17294213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17294676 17294774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17297729 17297820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17301121 17301215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17308272 17308357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17321598 17321665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17323338 17323466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGTCTGAGTTTTGGCTTATTTCGGCCCCTGGCGATAAGGAAAATTTACAGGCTCTGGAAAGGATGAACA
ATGTAACTTCAAAGTCTAACCTGTCCCACAACACCAAGTTTGCCATCCCAGACTTCAAGGTGGGGACTTT
GGATTCCCTTGTTGGCCTCTCTGATGAGCTGGGGAAACTCGATACCTTTGCTGAAAGCCTCATAAAGAGA
ATGGCACAGAGTGTGGTGGAGGTCATGGAAGATTCCAAGGGGAAAGCACACGAGACCCTCCTGGCTAACG
GAGTTGACCTGACATCCTTCGTGACGCACTTCGAGTGGGACATGGCCAAATATCCCGCCAAGCAGCCACT
GGTGAGCGTGGTGGACACACTGGCCAAGCAACTGGCACAAATCGAGACAGACCTGAAGTCCCGGACAGCC
GCCTACAGCGTTCTGAAGGCCAACCTGGAGAACTTGGAGAAGAGATCCACGGGGAACCTCTTCACTCGGA
CACTGAGCGATATTGTCAGCAAGGAAGACTTCGTACTTGATTCTGAATATCTCATAACCCTCCTGGTCAT
CGTCCCCAAGTCAAGCTTTGCACAGTGGCAGAAGACATATGAGTCCCTATCGGACATGGTGGTCCCTCGG
TCAACCAAATTGATCGCCGAGGACAACGAAGGTGGCCTCTTCACGGTGACTCTCTTCCGAAAAGTGATCG
AAGATTTCAAAGTCAAAGCCAAAGAAAACAAGTTCATTGTCCGGGAATTTTACTATGATGAAAAAGAAAT
TAAACGAGAAAGGGAGGAGATGACCAGGTTGCTGTCTGATAAGAAACAACAGTATCCAACTTCCTGTGTT
GCTCTAAAAAAGGGATCAGCCACCTACCGTGACCACAAGGTTAAGGTAGCCCCGCTAGGTAACCCTGCTA
GGCCTGCTGCGGGGCAGACCGACAGAGACAGAGAGAGTGAGGGCGAGGGTGAGGGACCTCTGCTGCGCTG
GCTCAAGGTGAACTTCAGCGAGGCCTTTATTGCCTGGATCCACATTAAGGCCCTGAGAGTGTTTGTGGAG
TCTGTGCTCAGGTATGGACTTCCAGTGAACTTCCAGGCTGTGCTCCTACAGCCCCATAAAAAGTCAGCCA
CCAAACGCCTGAGAGAGGTGCTCAACTCTGTCTTCCGGCACCTGGATGAAGTTGCTGCAGCAAGCATACT
GGATGCATCCGTGGAGATTCCTGGACTGCAGCTCAGCAACCAGGACTATTTCCCCTATGTGTACTTCCAT
ATCGACCTCAGCCTTCTTGACTAG

Translation (427 aa):
MSEFWLISAPGDKENLQALERMNNVTSKSNLSHNTKFAIPDFKVGTLDSLVGLSDELGKLDTFAESLIKR
MAQSVVEVMEDSKGKAHETLLANGVDLTSFVTHFEWDMAKYPAKQPLVSVVDTLAKQLAQIETDLKSRTA
AYSVLKANLENLEKRSTGNLFTRTLSDIVSKEDFVLDSEYLITLLVIVPKSSFAQWQKTYESLSDMVVPR
STKLIAEDNEGGLFTVTLFRKVIEDFKVKAKENKFIVREFYYDEKEIKREREEMTRLLSDKKQQYPTSCV
ALKKGSATYRDHKVKVAPLGNPARPAAGQTDRDRESEGEGEGPLLRWLKVNFSEAFIAWIHIKALRVFVE
SVLRYGLPVNFQAVLLQPHKKSATKRLREVLNSVFRHLDEVAAASILDASVEIPGLQLSNQDYFPYVYFH
IDLSLLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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