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Report for CCDS25925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25925.1 Public Mus musculus 12 Slc25a21 23 108 98 CCDS HistoryNCBI Gene:217593Re-query CCDS DB by CCDS ID:25925.1Re-query CCDS DB by GeneID:217593See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044634.11 ENSMUSP00000039289.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044634.11Link to Ensembl Protein Viewer:ENSMUSP00000039289.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044634Re-query CCDS DB by Protein ID:ENSMUSP00000039289
Original member Current member NCBI NM_172577.3 NP_766165.2 Accepted alive Link to Nucleotide Sequence:NM_172577.3Link to Protein Sequence:NP_766165.2Re-query CCDS DB by Nucleotide ID:NM_172577Re-query CCDS DB by Protein ID:NP_766165Link to BLAST:NP_766165.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766165.2 298 Q8BZ09 298 100% 0 0

Chromosomal Locations for CCDS 25925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 56713813 56713874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56717238 56717290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56718140 56718321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56738470 56738634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56766018 56766125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56770153 56770212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56775326 56775392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56858027 56858110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56928265 56928313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57196873 57196939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGTCGGCCTCCAACGTCAGCTTACTGCACGAGACCTCCAGGCAGGTCGCGGCCGGAGGGTCTGCAGGTC
TTGTAGAAATTTGCCTGATGCATCCTCTCGATGTGGTGAAAACCAGGTTCCAGGTGCAGAGAAGTGTAAC
AGACCCACAAAGTTATAGAACTGTAAGAGGCAGCTTCCAGATGATCTTCCGAACAGAGGGGTTGTTTGGC
TTTTACAAGGGAATTATCCCACCAATTTTAGCTGAAACACCAAAAAGAGCAGTCAAGTTTTCTACCTTTG
AGCTGTACAAGAAATTTCTGGGATATATGTCACTATCACCAGGGCTGACATTTCTCATCGCTGGCTTAGG
ATCGGGACTAACAGAAGCTGTCGTGGTTAACCCTTTCGAGGTGGTAAAAGTTGGCTTGCAAGTCAATCGG
AACTTGTTCAAAGAGCAACCATCTACTTTTGCTTATGCAAGACAAATCATTAAGAAGGAAGGCTTGGGGT
TCCAGGGCCTCAACAAAGGATTGACAGCAACTCTGGGACGTCACGGAATTTTCAACATGGTTTATTTTGG
CTTCTACCACAACGTCAAAAATATTATTCCATCCAGTAAGGATCCAACCTTGGAGTTTTTGAGAAAATTT
GGGATTGGTTTTGTCTCAGGGACAATGGGCTCAGTGTTTAACATCCCCTTTGATGTTGCAAAGAGTCGGA
TCCAAGGGCCCCAGCCAGTTCCTGGAGAGATCAAGTACCGAAGCTGCTTCAAAACAATGGAGATGATCTA
CCGGGAAGAAGGGATTTTAGCCTTATACAAAGGCCTGGTCCCTAAGGTGATGAGACTTGGACCAGGTGGT
GGGGTGATGTTGCTGGTGTATGAATACACCTATGCATGGCTGCAGGAAAACTGGTGA

Translation (298 aa):
MSASNVSLLHETSRQVAAGGSAGLVEICLMHPLDVVKTRFQVQRSVTDPQSYRTVRGSFQMIFRTEGLFG
FYKGIIPPILAETPKRAVKFSTFELYKKFLGYMSLSPGLTFLIAGLGSGLTEAVVVNPFEVVKVGLQVNR
NLFKEQPSTFAYARQIIKKEGLGFQGLNKGLTATLGRHGIFNMVYFGFYHNVKNIIPSSKDPTLEFLRKF
GIGFVSGTMGSVFNIPFDVAKSRIQGPQPVPGEIKYRSCFKTMEMIYREEGILALYKGLVPKVMRLGPGG
GVMLLVYEYTYAWLQENW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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