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Report for CCDS25990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25990.1 Public Mus musculus 12 Mthfd1 23 108 98 CCDS HistoryNCBI Gene:108156Re-query CCDS DB by CCDS ID:25990.1Re-query CCDS DB by GeneID:108156See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021443.6 ENSMUSP00000021443.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021443.6Link to Ensembl Protein Viewer:ENSMUSP00000021443.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021443Re-query CCDS DB by Protein ID:ENSMUSP00000021443
Original member Current member NCBI NM_138745.2 NP_620084.2 Accepted alive Link to Nucleotide Sequence:NM_138745.2Link to Protein Sequence:NP_620084.2Re-query CCDS DB by Nucleotide ID:NM_138745Re-query CCDS DB by Protein ID:NP_620084Link to BLAST:NP_620084.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620084.2 935 Q922D8 935 100% 0 0

Chromosomal Locations for CCDS 25990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 76255504 76255544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76270418 76270502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76279404 76279463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76280157 76280210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76280380 76280516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76280629 76280729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76282888 76283024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76283932 76284043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76288881 76289008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76289431 76289528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76289685 76289858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76290981 76291117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76293391 76293437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76294140 76294247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76294355 76294429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76297482 76297584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76300388 76300464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76301258 76301398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76302959 76303027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76303634 76303745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76303842 76303981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76307222 76307263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76310909 76311009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76311806 76311983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76314401 76314508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76314949 76315101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76317607 76317696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2808 nt):
ATGGCACCAGCGGGAATCCTGAACGGGAAACTGGTTTCTGCGCAAATCAGGGATCGACTGAAGAACCAGG
TAACTCGGATGCAGGAGCAGGTACCTGGCTTCACCCCTGGCCTGGCAATCCTGCAGGTTGGCGACAGAGA
TGATTCCAATCTTTATATAAATGTGAAGCTGAAGGCTGCTGAAGAGATTGGGATCAAAGCCACTCACATT
AAATTACCAAGAACATCCACAGAGTCCGAGGTGTTAAAATATGTCATCTCCCTGAACGAGGATGCCTCTG
TGCACGGATTCATAGTGCAGCTGCCTTTAGATTCAGAGAATTCCATTAACACTGAGGCAGTCATCAATGC
CATTGCACCCGAGAAGGATGTGGATGGGTTGACGAGCGTCAGTGCTGGGAAGCTCGCCAGAGGTGATCTA
AATGACTGCTTCATCCCATGCACACCCAAGGGATGCTTGGAACTCATCAAAGAGGCAGGGGTGCAGATTG
CCGGAAGGCACGCGGTGGTGGTTGGTCGAAGTAAGATAGTTGGTGCACCCATGCATGACCTCCTTCTGTG
GAACAATGCCACGGTGACCACCTGCCACTCCAAGACTGCCAATCTGGACAAGGAGGTAAATAAAGGAGAC
ATTCTGGTGGTTGCCACAGGCCAGCCTGAGATGGTGAAGGGGGAGTGGATCAAGCCTGGGGCTGTGGTCA
TAGACTGTGGGATCAATTATGTTCCAGATGATACAAAACCAAATGGAAGGAAAGTCGTGGGTGATGTGGC
CTACGATGAGGCCAAGGAGAGGGCGAGCTTTATCACGCCTGTCCCTGGTGGCGTGGGGCCCATGACCGTG
GCAATGCTGATGCAGAGCACAGTAGAGAGCGCACAGCGCTTCCTACAGAAATTTAAGCCAGGGAAGTGGA
CAATTCAGTATAACAAGCTGAACCTCAAGACTCCTGTCCCAAGTGACATTGCTATATCACGATCTTGCAA
ACCAAAGCTCATCGGGAACCTGGCCCGAGAAATCGGGCTGCTCACCGAAGAGGTGGAGTTGTACGGGGAA
ACGAAGGCTAAAGTCTTGCTGTCAGCATTAGATCGCCTGAAGCATCAGCCAGATGGGAAATATGTCGTGG
TGACTGGAATTACTCCAACACCGCTGGGAGAAGGGAAGAGTACCACCACGATCGGGCTGGTGCAGGCCCT
CGGCGCCCACCTGCGACAGAACGTCTTTGCATGTGTGCGACAGCCTTCGCAGGGCCCCACCTTTGGGATA
AAAGGTGGCGCTGCAGGAGGCGGCTATTCCCAGGTCATTCCTATGGAAGAGTTTAACCTCCACCTCACTG
GTGACATCCACGCCATCACTGCTGCTAACAACCTCGTGGCTGCTGCCATTGATGCTCGGATATTTCATGA
GCTGACCCAGACAGACAAGGCTCTCTTTAATCGTCTGGTACCTTCAGTAAACGGAATAAGAAAATTCTCT
GACATCCAAATCCGCAGGTTACGGAGGCTAGGCATTGAGAAGACTGACCCCACCACGCTGACAGATGACG
AGATAAACAGATTTGCAAGACTGGATATTGACCCAGAAACCATAACATGGCAGAGAGTGTTGGACACCAA
CGATAGATTCCTGAGGAAGATCACAATTGGACAGTCTCCAACAGAGAAAGGCCACACACGCACGGCCCAG
TTTGATATCTCTGTGGCCAGTGAGATCATGGCAGTCCTGGCCCTCACGAGCTCTCTGGAAGACATGAGAG
AGAGACTGGGCAGAATGGTGGTAGCGTCCAGTAAGAAAGGGGAGCCTATCAGTTGCGAAGACCTGGGCGT
GAGTGGGGCGCTGACGGTGCTGATGAAGGATGCAATCAAGCCCAACCTCATGCAGACCTTAGAGGGCACG
CCAGTGTTTGTCCATGCCGGGCCTTTCGCCAACATTGCACACGGGAATTCCTCCATCATTGCAGACCGGA
TTGCACTCAAGCTGGTAGGCCCTGAGGGCTTCGTAGTAACGGAAGCTGGATTCGGAGCAGACATAGGAAT
GGAAAAGTTCTTCAACATCAAGTGCCGGTATTCTGGTCTCCAGCCACACGTGGTGGTTCTGGTTGCCACT
GTCAGGGCCCTTAAGATGCACGGGGGTGGCCCCACGGTCACCGCTGGACTGCCTCTTCCCAAGGCTTACA
CAGAAGAGGACCTGGACCTGGTTGAAAAGGGCTTCAGTAACTTGAGGAAACAAATCGAAAATGCTAGAAT
GTTTGGAGTCCCTGTCGTCGTGGCTGTGAACGTGTTCAAGACAGATACAGATGCTGAGCTGGACCTTGTC
AGCCGCCTCTCCAGAGAACACGGGGCTTTTGATGCTGTCAAGTGCACCCACTGGGCAGAAGGGGGCCAGG
GGGCCTTGGCCCTGGCTCAGGCTGTCCAGAGAGCGTCACAGGCCCCCAGCAGCTTCCAGCTCCTCTATGA
CCTCAAGCTCTCAATTGAGGATAAAATCAGGATTATTGCACAGAGGATCTACGGGGCCGATGACATCGAA
TTGCTCCCGGAAGCACAGAACAAAGCAGAAATTTACACAAAGCAGGGCTTTGGGAATCTACCCATCTGCA
TGGCCAAAACACACTTGTCCTTGTCTCACAACCCAGAGCAAAAAGGGGTGCCTACTGGTTTCGTTCTGCC
CATCCGGGACATCCGTGCCAGCGTTGGGGCAGGTTTCCTGTATCCTTTAGTAGGAACGATGAGCACAATG
CCTGGACTCCCTACGCGGCCCTGTTTTTATGATATTGATTTGGATCCTGAAACGGAACAAGTGAATGGAT
TGTTTTAA

Translation (935 aa):
MAPAGILNGKLVSAQIRDRLKNQVTRMQEQVPGFTPGLAILQVGDRDDSNLYINVKLKAAEEIGIKATHI
KLPRTSTESEVLKYVISLNEDASVHGFIVQLPLDSENSINTEAVINAIAPEKDVDGLTSVSAGKLARGDL
NDCFIPCTPKGCLELIKEAGVQIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTANLDKEVNKGD
ILVVATGQPEMVKGEWIKPGAVVIDCGINYVPDDTKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTV
AMLMQSTVESAQRFLQKFKPGKWTIQYNKLNLKTPVPSDIAISRSCKPKLIGNLAREIGLLTEEVELYGE
TKAKVLLSALDRLKHQPDGKYVVVTGITPTPLGEGKSTTTIGLVQALGAHLRQNVFACVRQPSQGPTFGI
KGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAAIDARIFHELTQTDKALFNRLVPSVNGIRKFS
DIQIRRLRRLGIEKTDPTTLTDDEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQSPTEKGHTRTAQ
FDISVASEIMAVLALTSSLEDMRERLGRMVVASSKKGEPISCEDLGVSGALTVLMKDAIKPNLMQTLEGT
PVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGADIGMEKFFNIKCRYSGLQPHVVVLVAT
VRALKMHGGGPTVTAGLPLPKAYTEEDLDLVEKGFSNLRKQIENARMFGVPVVVAVNVFKTDTDAELDLV
SRLSREHGAFDAVKCTHWAEGGQGALALAQAVQRASQAPSSFQLLYDLKLSIEDKIRIIAQRIYGADDIE
LLPEAQNKAEIYTKQGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTM
PGLPTRPCFYDIDLDPETEQVNGLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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