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Report for CCDS26009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26009.1 Public Mus musculus 12 Rdh12 23 108 98 CCDS HistoryNCBI Gene:77974Re-query CCDS DB by CCDS ID:26009.1Re-query CCDS DB by GeneID:77974See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26009.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021548.11 ENSMUSP00000021548.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021548.11Link to Ensembl Protein Viewer:ENSMUSP00000021548.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021548Re-query CCDS DB by Protein ID:ENSMUSP00000021548
Original member Current member NCBI NM_030017.4 NP_084293.1 Accepted alive Link to Nucleotide Sequence:NM_030017.4Link to Protein Sequence:NP_084293.1Re-query CCDS DB by Nucleotide ID:NM_030017Re-query CCDS DB by Protein ID:NP_084293Link to BLAST:NP_084293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084293.1 316 Q8BYK4 316 100% 0 0

Chromosomal Locations for CCDS 26009.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 79209041 79209108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79210841 79210959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79211388 79211543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79212653 79212757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79213544 79213753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79218676 79218865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79221963 79222065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGCTGTTTATCTTGGTACTGCTTACGTCCTTCCTCTCCATCTTGTATCTGACAGCTCCATCCATCAGGA
AGTTCTTTGCTGGTGGAGTTTGTACAACAAATGTCCAGATCCCAGGGAAGGTAGTGGTCATCACAGGTGC
CAACACAGGCATTGGCAAGGAGACAGCCAGAGAGCTTGCTCGAAGAGGAGCACGAGTATACATTGCTTGC
CGAGATGTGCTGAAGGGAGAGTCTGCTGCTAGTGAAATCCGAGCAGATACCAAGAACTCCCAGGTGCTAG
TGCGGAAATTGGACCTGTCTGACACCAAATCCATCCGAGCCTTTGCTGAACGCTTCCTAGCAGAGGAAAA
GAAGCTTCATATTTTGATCAACAATGCAGGAGTGATGATGTGCCCATATTCTAAGACAACAGATGGCTTT
GAGACCCACTTTGGAGTCAACCACCTGGGACACTTTCTTCTTACATACCTGCTGTTGGAGAGGCTGAAGG
AGTCTGCTCCCGCACGGGTGGTCAACCTTTCCTCAATAGCTCACCTGATTGGCAAGATCCGTTTCCATGA
CCTCCAAGGCCAGAAACGATACTGCAGTGCTTTTGCCTATGGCCACAGCAAGCTGGCCAATCTGCTCTTC
ACTCGAGAACTGGCTAAGCGGCTCCAAGGGACTGGAGTCACCGCCTATGCGGTTCACCCGGGCGTTGTAT
TGTCAGAGATCACCAGGAACTCCTACCTGCTGTGTTTGCTATGGCGGCTCTTCTCACCCTTCTTCAAGTC
CACTTCTCAGGGGGCTCAGACCAGCCTGCACTGTGCTCTGGCGGAGGACCTAGAGCCCCTGAGTGGAAAG
TACTTCAGTGACTGCAAGAGGATGTGGGTATCCTCAAGGGCCCGGAACAAGAAAACAGCTGAGCGATTGT
GGAACGTCAGCTGCGAGCTTCTAGGAATCCAGTGGGAATAG

Translation (316 aa):
MLFILVLLTSFLSILYLTAPSIRKFFAGGVCTTNVQIPGKVVVITGANTGIGKETARELARRGARVYIAC
RDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGF
ETHFGVNHLGHFLLTYLLLERLKESAPARVVNLSSIAHLIGKIRFHDLQGQKRYCSAFAYGHSKLANLLF
TRELAKRLQGTGVTAYAVHPGVVLSEITRNSYLLCLLWRLFSPFFKSTSQGAQTSLHCALAEDLEPLSGK
YFSDCKRMWVSSRARNKKTAERLWNVSCELLGIQWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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