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Report for CCDS2603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2603.1 Public Homo sapiens 3 SLC6A1 24 110 108 CCDS HistoryNCBI Gene:6529Re-query CCDS DB by CCDS ID:2603.1Re-query CCDS DB by GeneID:6529See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2603.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287766.10 ENSP00000287766.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287766.10Link to Ensembl Protein Viewer:ENSP00000287766.4Re-query CCDS DB by Nucleotide ID:ENST00000287766Re-query CCDS DB by Protein ID:ENSP00000287766
Original member Current member EBI ENST00000646924.1 ENSP00000493591.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646924.1Link to Ensembl Protein Viewer:ENSP00000493591.1Re-query CCDS DB by Nucleotide ID:ENST00000646924Re-query CCDS DB by Protein ID:ENSP00000493591
Original member Current member EBI ENST00000642735.1 ENSP00000494050.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642735.1Link to Ensembl Protein Viewer:ENSP00000494050.1Re-query CCDS DB by Nucleotide ID:ENST00000642735Re-query CCDS DB by Protein ID:ENSP00000494050
Original member Current member EBI ENST00000646022.1 ENSP00000494134.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646022.1Link to Ensembl Protein Viewer:ENSP00000494134.1Re-query CCDS DB by Nucleotide ID:ENST00000646022Re-query CCDS DB by Protein ID:ENSP00000494134
Original member Current member EBI ENST00000643396.1 ENSP00000494136.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643396.1Link to Ensembl Protein Viewer:ENSP00000494136.1Re-query CCDS DB by Nucleotide ID:ENST00000643396Re-query CCDS DB by Protein ID:ENSP00000494136
Original member Current member EBI ENST00000642639.1 ENSP00000494191.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642639.1Link to Ensembl Protein Viewer:ENSP00000494191.1Re-query CCDS DB by Nucleotide ID:ENST00000642639Re-query CCDS DB by Protein ID:ENSP00000494191
Original member Current member EBI ENST00000642767.1 ENSP00000494346.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642767.1Link to Ensembl Protein Viewer:ENSP00000494346.1Re-query CCDS DB by Nucleotide ID:ENST00000642767Re-query CCDS DB by Protein ID:ENSP00000494346
Original member Current member EBI ENST00000642201.1 ENSP00000494778.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642201.1Link to Ensembl Protein Viewer:ENSP00000494778.1Re-query CCDS DB by Nucleotide ID:ENST00000642201Re-query CCDS DB by Protein ID:ENSP00000494778
Original member Current member EBI ENST00000643498.1 ENSP00000494997.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643498.1Link to Ensembl Protein Viewer:ENSP00000494997.1Re-query CCDS DB by Nucleotide ID:ENST00000643498Re-query CCDS DB by Protein ID:ENSP00000494997
Original member Current member EBI ENST00000645054.1 ENSP00000495751.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645054.1Link to Ensembl Protein Viewer:ENSP00000495751.1Re-query CCDS DB by Nucleotide ID:ENST00000645054Re-query CCDS DB by Protein ID:ENSP00000495751
Original member Current member EBI ENST00000642820.1 ENSP00000495900.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642820.1Link to Ensembl Protein Viewer:ENSP00000495900.1Re-query CCDS DB by Nucleotide ID:ENST00000642820Re-query CCDS DB by Protein ID:ENSP00000495900
Original member Current member EBI ENST00000646570.1 ENSP00000496064.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646570.1Link to Ensembl Protein Viewer:ENSP00000496064.1Re-query CCDS DB by Nucleotide ID:ENST00000646570Re-query CCDS DB by Protein ID:ENSP00000496064
Original member Current member EBI ENST00000645029.1 ENSP00000496171.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645029.1Link to Ensembl Protein Viewer:ENSP00000496171.1Re-query CCDS DB by Nucleotide ID:ENST00000645029Re-query CCDS DB by Protein ID:ENSP00000496171
Original member Current member EBI ENST00000647194.1 ENSP00000496238.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647194.1Link to Ensembl Protein Viewer:ENSP00000496238.1Re-query CCDS DB by Nucleotide ID:ENST00000647194Re-query CCDS DB by Protein ID:ENSP00000496238
Original member Current member EBI ENST00000646060.1 ENSP00000496302.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646060.1Link to Ensembl Protein Viewer:ENSP00000496302.1Re-query CCDS DB by Nucleotide ID:ENST00000646060Re-query CCDS DB by Protein ID:ENSP00000496302
Original member Current member EBI ENST00000642515.1 ENSP00000496348.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642515.1Link to Ensembl Protein Viewer:ENSP00000496348.1Re-query CCDS DB by Nucleotide ID:ENST00000642515Re-query CCDS DB by Protein ID:ENSP00000496348
Original member Current member EBI ENST00000645974.1 ENSP00000496390.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645974.1Link to Ensembl Protein Viewer:ENSP00000496390.1Re-query CCDS DB by Nucleotide ID:ENST00000645974Re-query CCDS DB by Protein ID:ENSP00000496390
Original member Current member EBI ENST00000645592.1 ENSP00000496619.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645592.1Link to Ensembl Protein Viewer:ENSP00000496619.1Re-query CCDS DB by Nucleotide ID:ENST00000645592Re-query CCDS DB by Protein ID:ENSP00000496619
Original member Current member EBI ENST00000646702.1 ENSP00000496697.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646702.1Link to Ensembl Protein Viewer:ENSP00000496697.1Re-query CCDS DB by Nucleotide ID:ENST00000646702Re-query CCDS DB by Protein ID:ENSP00000496697
Original member Current member NCBI NM_001348250.2 NP_001335179.1 Accepted alive Link to Nucleotide Sequence:NM_001348250.2Link to Protein Sequence:NP_001335179.1Re-query CCDS DB by Nucleotide ID:NM_001348250Re-query CCDS DB by Protein ID:NP_001335179Link to BLAST:NP_001335179.1
Original member Current member NCBI NM_003042.4 NP_003033.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003042.4Link to Protein Sequence:NP_003033.3Re-query CCDS DB by Nucleotide ID:NM_003042Re-query CCDS DB by Protein ID:NP_003033Link to BLAST:NP_003033.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335179.1 599 P30531 599 100% 0 0
NP_003033.3 599 P30531 599 100% 0 0

Chromosomal Locations for CCDS 2603.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 11017212 11017449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11017843 11017974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11018598 11018698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11020213 11020322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11022336 11022468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11025449 11025583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11025773 11025876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11026235 11026359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11028735 11028847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11029221 11029352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11031177 11031279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11033639 11033739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11034531 11034698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11036862 11036966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGGCGACCAACGGCAGCAAGGTGGCCGACGGGCAGATCTCCACCGAGGTCAGCGAGGCCCCTGTGGCCA
ATGACAAGCCCAAAACCTTGGTGGTCAAGGTGCAGAAGAAGGCGGCAGACCTCCCCGACCGGGACACGTG
GAAGGGCCGCTTCGACTTCCTCATGTCCTGTGTGGGCTATGCCATCGGCCTGGGCAACGTCTGGAGGTTC
CCCTATCTCTGCGGGAAAAATGGTGGGGGAGCCTTCCTGATCCCCTATTTCCTGACACTCATCTTTGCGG
GGGTCCCACTCTTCCTGCTGGAGTGCTCCCTGGGCCAGTACACCTCCATCGGGGGGCTAGGGGTATGGAA
GCTGGCTCCTATGTTCAAGGGCGTGGGCCTTGCGGCTGCTGTGCTATCATTCTGGCTGAACATCTACTAC
ATCGTCATCATCTCCTGGGCCATTTACTACCTGTACAACTCCTTCACCACGACACTGCCGTGGAAACAGT
GCGACAACCCCTGGAACACAGACCGCTGCTTCTCCAACTACAGCATGGTCAACACTACCAACATGACCAG
CGCTGTGGTGGAGTTCTGGGAGCGCAACATGCATCAGATGACGGACGGGCTGGATAAGCCAGGTCAGATC
CGCTGGCCACTGGCCATCACGCTGGCCATCGCCTGGATCCTTGTGTATTTCTGTATCTGGAAGGGTGTTG
GCTGGACTGGAAAGGTGGTCTACTTTTCAGCCACATACCCCTACATCATGCTGATCATCCTGTTCTTCCG
TGGAGTGACGCTGCCCGGGGCCAAGGAGGGCATCCTCTTCTACATCACACCCAACTTCCGCAAGCTGTCT
GACTCCGAGGTGTGGCTGGATGCGGCAACCCAGATCTTCTTCTCATACGGGCTGGGCCTGGGGTCCCTGA
TCGCTCTCGGGAGCTACAACTCTTTCCACAACAATGTCTACAGGGACTCCATCATCGTCTGCTGCATCAA
TTCGTGCACCAGCATGTTCGCAGGATTCGTCATCTTCTCCATCGTGGGCTTCATGGCCCATGTCACCAAG
AGGTCCATTGCTGATGTGGCGGCCTCAGGCCCCGGGCTGGCGTTCCTGGCATACCCAGAGGCGGTGACCC
AGCTGCCTATCTCCCCACTCTGGGCCATCCTCTTCTTCTCCATGCTGTTGATGCTGGGCATTGACAGCCA
GTTCTGCACTGTGGAGGGCTTCATCACAGCCCTGGTGGATGAGTACCCCAGGCTCCTCCGCAACCGCAGA
GAGCTCTTCATTGCTGCTGTCTGCATCATCTCCTACCTGATCGGTCTCTCTAACATCACTCAGGGGGGTA
TTTATGTCTTCAAACTCTTTGACTACTACTCTGCCAGTGGCATGAGCCTGCTGTTCCTCGTGTTCTTTGA
ATGTGTCTCTATTTCCTGGTTTTACGGTGTCAACCGATTCTATGACAATATCCAAGAGATGGTTGGATCC
AGGCCCTGCATCTGGTGGAAACTCTGCTGGTCTTTCTTCACACCAATCATTGTGGCGGGCGTGTTCATTT
TCAGTGCTGTGCAGATGACGCCACTCACCATGGGAAACTATGTTTTCCCCAAGTGGGGCCAGGGTGTGGG
CTGGCTGATGGCTCTGTCTTCCATGGTCCTCATCCCCGGGTACATGGCCTACATGTTCCTCACCTTAAAG
GGCTCCCTGAAGCAGCGCATCCAAGTCATGGTCCAGCCCAGCGAAGACATCGTTCGCCCAGAGAATGGTC
CTGAGCAGCCCCAGGCGGGCAGCTCCACCAGCAAGGAGGCCTACATCTAG

Translation (599 aa):
MATNGSKVADGQISTEVSEAPVANDKPKTLVVKVQKKAADLPDRDTWKGRFDFLMSCVGYAIGLGNVWRF
PYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYY
IVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFSNYSMVNTTNMTSAVVEFWERNMHQMTDGLDKPGQI
RWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLS
DSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTK
RSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRR
ELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGS
RPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMGNYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLK
GSLKQRIQVMVQPSEDIVRPENGPEQPQAGSSTSKEAYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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