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Report for CCDS26052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26052.1 Public Mus musculus 12 Dlst 23 108 98 CCDS HistoryNCBI Gene:78920Re-query CCDS DB by CCDS ID:26052.1Re-query CCDS DB by GeneID:78920See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053811.9 ENSMUSP00000060346.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053811.9Link to Ensembl Protein Viewer:ENSMUSP00000060346.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000053811Re-query CCDS DB by Protein ID:ENSMUSP00000060346
Original member Current member EBI ENSMUST00000221357.1 ENSMUSP00000152664.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221357.1Link to Ensembl Protein Viewer:ENSMUSP00000152664.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221357Re-query CCDS DB by Protein ID:ENSMUSP00000152664
Original member Current member NCBI NM_030225.4 NP_084501.1 Accepted alive Link to Nucleotide Sequence:NM_030225.4Link to Protein Sequence:NP_084501.1Re-query CCDS DB by Nucleotide ID:NM_030225Re-query CCDS DB by Protein ID:NP_084501Link to BLAST:NP_084501.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084501.1 454 Q9D2G2-1 454 100% 0 0

Chromosomal Locations for CCDS 26052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 85110897 85110959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85111498 85111531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85115273 85115321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85118359 85118414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85118527 85118601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85118782 85118837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85119233 85119344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85121987 85122139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85122780 85122856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85123774 85123871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85128311 85128441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85129792 85129865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85130460 85130543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85130897 85131064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85132619 85132753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGCTGTCCCGGTCACGCTGCGTGTCCCGGGCGTTCAGCCGCTCGCTTTCTGCCTTCCAGAAGGGGAACT
GCCCTCTAGGGAGACGTTCCCTGCCTGGGGTCTCCTTATGTCGGGGACCAGGTTACCCTGACAACAGGAA
GATGGTCATTAACAGTGGTAGCGTCTTCAGGGTTCGCTTCTTCCAAACCACGGCTGTGTGCAAGAATGAT
GTGATAACAGTCCAAACCCCAGCGTTTGCAGAGTCTGTCACAGAGGGAGATGTCAGGTGGGAGAAAGCTG
TTGGAGATGCGGTTGCAGAAGATGAAGTGGTGTGTGAGATTGAGACAGACAAGACTTCTGTGCAGGTTCC
GTCGCCAGCAAATGGCATCATTGAAGCTCTTTTGGTACCCGATGGGGGCAAAGTTGAAGGAGGAACTCCT
CTGTTCACACTCAGGAAAACTGGTGCTGCTCCTGCTAAGGCCAAACCAGCTGAAACTCCTGCTCCAGCCC
ACAAAGCAGAGCCCGCAGCACCGGCGGCCCCTCCTCCCCCCGCAGCACCTGTGCTCACTCAGATGCCACC
AGTGCCCTCACCCTCACAGCCTCCTTCTAGCAAACCAGTGTCTGCAATAAAACCCACTGCTGCCCCTCCA
CTGGCTGAGGCAGGAGCTGCTAAAGGTCTGCGTTCAGAACATCGGGAGAAAATGAACAGGATGCGGCAGC
GCATCGCCCAGCGTCTGAAGGAAGCCCAGAACACGTGTGCAATGCTGACGACTTTCAATGAGGTTGACAT
GAGTAACATACAAGAGATGAGAGCTCGGCACAAGGATGCTTTCCTGAAAAAACATAACCTCAAATTAGGC
TTCATGTCAGCATTTGTGAAGGCCTCGGCGTTCGCCTTGCAGGAGCAGCCTGTTGTAAATGCAGTGATTG
ATGATGCAACCAAGGAAGTGGTGTATAGAGATTATATTGACATCAGTGTTGCAGTTGCTACCCCGAGGGG
TCTCGTGGTTCCTGTCATCAGGAATGTGGAAACTATGAACTATGCAGATATTGAACGGACCATTAATGAA
CTAGGAGAGAAGGCCCGGAAGAATGAACTTGCCATTGAAGATATGGATGGTGGTACCTTCACCATCAGCA
ACGGAGGAGTTTTTGGCTCACTTTTTGGAACACCCATTATCAACCCCCCTCAATCTGCCATCCTGGGCAT
GCACGCCATCTTTGACAGGCCTGTGGCTGTGGGAGGCAAGGTGGAAGTTCGACCTATGATGTATGTAGCC
CTGACCTATGACCACCGGCTGATTGATGGCAGAGAGGCTGTGACTTTCCTCCGAAAAATCAAGGCAGCAG
TAGAAGATCCAAGAGTCCTCCTCCTAGACCTTTAG

Translation (454 aa):
MLSRSRCVSRAFSRSLSAFQKGNCPLGRRSLPGVSLCRGPGYPDNRKMVINSGSVFRVRFFQTTAVCKND
VITVQTPAFAESVTEGDVRWEKAVGDAVAEDEVVCEIETDKTSVQVPSPANGIIEALLVPDGGKVEGGTP
LFTLRKTGAAPAKAKPAETPAPAHKAEPAAPAAPPPPAAPVLTQMPPVPSPSQPPSSKPVSAIKPTAAPP
LAEAGAAKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIQEMRARHKDAFLKKHNLKLG
FMSAFVKASAFALQEQPVVNAVIDDATKEVVYRDYIDISVAVATPRGLVVPVIRNVETMNYADIERTINE
LGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHAIFDRPVAVGGKVEVRPMMYVA
LTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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