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Report for CCDS26160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26160.1 Public Mus musculus 12 Cyp46a1 23 108 98 CCDS HistoryNCBI Gene:13116Re-query CCDS DB by CCDS ID:26160.1Re-query CCDS DB by GeneID:13116See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021684.5 ENSMUSP00000021684.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021684.5Link to Ensembl Protein Viewer:ENSMUSP00000021684.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021684Re-query CCDS DB by Protein ID:ENSMUSP00000021684
Original member NCBI NM_010010.2 NP_034140.1 Updated not alive Link to Nucleotide Sequence:NM_010010.2Link to Protein Sequence:NP_034140.1Re-query CCDS DB by Nucleotide ID:NM_010010Re-query CCDS DB by Protein ID:NP_034140
Current member NCBI NM_010010.3 NP_034140.1 Accepted alive Link to Nucleotide Sequence:NM_010010.3Link to Protein Sequence:NP_034140.1Re-query CCDS DB by Nucleotide ID:NM_010010Re-query CCDS DB by Protein ID:NP_034140Link to BLAST:NP_034140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034140.1 500 Q9WVK8 500 100% 0 0

Chromosomal Locations for CCDS 26160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 108334446 108334564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108342323 108342403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108343014 108343095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108345574 108345647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108346089 108346175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108351182 108351320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108351914 108352024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108352774 108352924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108353090 108353152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108355424 108355496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108357487 108357571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108358031 108358141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108360481 108360569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108361196 108361262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108361514 108361684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGAGCCCCGGGCTGCTGCTGCTCGGCAGCGCCGTCCTGCTCGCCTTCGGCCTCTGCTGCACCTTCGTGC
ATCGCGCTCGCAGCCGCTATGAGCACATCCCCGGGCCGCCGCGGCCCAGCTTCCTTCTTGGACATCTCCC
CTACTTTTGGAAAAAGGACGAAGATTGTGGCCGTGTGCTCCAAGATGTGTTTCTGGATTGGGCTAAGAAG
TATGGTCCTGTTGTAAGAGTCAATGTCTTCTACAAGACCTCAGTCATTGTCACGAGTCCGGAGTCAGTCA
AGAAGTTCCTGATGTCCACCAAGTACAACAAGGACTCCAAGATGTACCGCGCGCTTCAGACTGTGTTTGG
GGAGAGACTGTTTGGCCAGGGCTTGGTGTCTGAATGTGACTATGGGCGCTGGTACAAGCAGAGGAAAGTC
ATGGACTTGGCCTTCAGCCGCAGCTCCTTGGTCAGCCTGATGGAGACGTTCAACGAGAAGGCGGAGCAGC
TGGTGGAAATCCTAGAAGCTAAGGCAGATGGACAGACACCCGTGTCCATGCAGGACATGCTGACCTGTGC
CACCATCGACATCCTGGCCAAGGCAGCTTTTGGGATGGAGACCAGTATGTTACTGGGTGCCCAGAAACCG
CTGTCCCAGGCAGTGAAGGTCATGCTGGAGGGCATCAGTGCATCCCGTAACACCCTGGCAAAGTTCATGC
CAGGGAAGAGAAAGCAGCTTCGGGAGATCCGCGAGAGCATCCGTCTGCTGCGCCAGGTGGGGAAGGATTG
GGTGCAGCGCCGCCGCGAAGCCCTGAAGAGGGGCGAGGACATGCCGGCTGACATCCTCACGCAGATCCTC
AAAGCTGAAGAGGGAGCTCAGGACGATGAGGTTCTGCTGGACAACTTTGTCACCTTCTTCATTGCGGGTC
ATGAGACTTCTGCCAACCATCTGGCATTCACAGTGATGGAGTTGTCTCGCCAGCCAGAGATTGTGGCAAG
GCTGCAGGCCGAGGTGGATGAGGTTGTCGGTTCCAAGAGGCACCTGGACTACGAGGATCTGGGGAGACTG
CAGTATCTGTCGCAGGTCCTCAAAGAGTCTCTGAGGCTGTACCCGCCAGCGTGGGGCACCTTTCGCCTGC
TGGAGGAGGAGACCTTGATTGATGGGGTCAGAGTCCCTGGCAATACTCCTCTCCTGTTCAGCACCTACGT
CATGGGGAGAATGGACACCTACTTTGAAGACCCATTGACTTTCAACCCTGACCGCTTCGGCCCTGGAGCG
CCCAAGCCACGGTTCACTTACTTTCCCTTTTCCCTGGGCCACCGGTCCTGCATCGGCCAACAGTTTGCTC
AGATGGAGGTGAAAGTTGTCATGGCCAAGCTGCTTCAGAGGATCGAGTTCCGGCTAGTGCCTGGGCAGCG
CTTTGGGCTGCAAGAGCAGGCTACGCTCAAGCCATTGGACCCCGTGCTGTGCACCCTGAGGCCCCGGGGC
TGGCAGCCTGCACCCCCACCCCCACCCTGCTGA

Translation (500 aa):
MSPGLLLLGSAVLLAFGLCCTFVHRARSRYEHIPGPPRPSFLLGHLPYFWKKDEDCGRVLQDVFLDWAKK
YGPVVRVNVFYKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECDYGRWYKQRKV
MDLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTCATIDILAKAAFGMETSMLLGAQKP
LSQAVKVMLEGISASRNTLAKFMPGKRKQLREIRESIRLLRQVGKDWVQRRREALKRGEDMPADILTQIL
KAEEGAQDDEVLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVVGSKRHLDYEDLGRL
QYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGA
PKPRFTYFPFSLGHRSCIGQQFAQMEVKVVMAKLLQRIEFRLVPGQRFGLQEQATLKPLDPVLCTLRPRG
WQPAPPPPPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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