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Report for CCDS26550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26550.1 Public Mus musculus 13 B4galt7 23 108 98 CCDS HistoryNCBI Gene:218271Re-query CCDS DB by CCDS ID:26550.1Re-query CCDS DB by GeneID:218271See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26550.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064701.7 ENSMUSP00000068532.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064701.7Link to Ensembl Protein Viewer:ENSMUSP00000068532.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064701Re-query CCDS DB by Protein ID:ENSMUSP00000068532
Original member Current member NCBI NM_146045.2 NP_666157.1 Accepted alive Link to Nucleotide Sequence:NM_146045.2Link to Protein Sequence:NP_666157.1Re-query CCDS DB by Nucleotide ID:NM_146045Re-query CCDS DB by Protein ID:NP_666157Link to BLAST:NP_666157.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666157.1 327 Q8R087-1 327 100% 0 0

Chromosomal Locations for CCDS 26550.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55600143 55600192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55604020 55604382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55607197 55607422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55608342 55608425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55608698 55608802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55609219 55609374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGTTGCCCTCCCGGAGGAAAGCGGCGCAGCTGCCCTGGGAGGATGGCAGGGCCAGGTTGCTTCCTGGAG
GCCTCCGCCGGAAATGCTCCATCTTCCACCTCTTCATTGCCTTTCTCCTGTTGGTCTTCTTCTCCCTGCT
CTGGCTGCAGCTCAGCTGTTCTGGAGATATGGCCCAGGTGACCAGGGGACAAGGGCAAGAGACCTCGGGT
CCACCCCGGGCTTGCCCTCCAGAGCCGCCCCCTGAGCACTGGGAAGAAGATGAGTCCTGGGGGCCCCACC
GCTTGGCAGTGCTGGTGCCCTTTCGTGAGCGCTTTGAGGAGCTGCTGGTCTTTGTGCCCCACATGCACCG
CTTCCTAAGCAGGAAGAGGATCCAGCACCACATCTATGTGCTCAACCAGGTGGACCATTTCAGGTTCAAT
CGGGCAGCACTCATCAATGTGGGCTTCCTGGAGAGCAGCAACAGCACAGACTACATCGCCATGCACGATG
TGGACCTGCTCCCTCTCAATGAGGAGCTGGACTATGGCTTCCCGGAGGCTGGGCCCTTCCATGTGGCCTC
CCCAGAGCTCCACCCTCTCTACCACTACAAGACCTATGTGGGCGGCATTCTGCTGCTGTCCAAACAGCAC
TACCAGCTGTGCAACGGAATGTCCAACCGCTTTTGGGGCTGGGGCCGAGAGGATGATGAATTCTACCGGC
GCATCAAAGGAGCTGGCCTCCAGCTTTTCCGCCCCTCGGGAATCACAACTGGGTACCAGACATTTCGCCA
CTTGCATGACCCTGCCTGGCGGAAGAGGGACCAAAAACGCATTGCGGCTCAAAAACAGGAACAGTTCAAG
GTGGACCGGGAGGGAGGCCTGAACACTGTGAAGTACCGGGTGGATTCCCGCACGGCACTGTCTATAGGAG
GGGCCCCGTGCACTGTCCTCAATGTCATGCTGGACTGCGATAAAACAGCCACCCCATGGTGCATATTTGG
CTGA

Translation (327 aa):
MLPSRRKAAQLPWEDGRARLLPGGLRRKCSIFHLFIAFLLLVFFSLLWLQLSCSGDMAQVTRGQGQETSG
PPRACPPEPPPEHWEEDESWGPHRLAVLVPFRERFEELLVFVPHMHRFLSRKRIQHHIYVLNQVDHFRFN
RAALINVGFLESSNSTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLYHYKTYVGGILLLSKQH
YQLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRPSGITTGYQTFRHLHDPAWRKRDQKRIAAQKQEQFK
VDREGGLNTVKYRVDSRTALSIGGAPCTVLNVMLDCDKTATPWCIFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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