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Report for CCDS26594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26594.1 Public Mus musculus 13 Hsd17b3 23 108 98 CCDS HistoryNCBI Gene:15487Re-query CCDS DB by CCDS ID:26594.1Re-query CCDS DB by GeneID:15487See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26594.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039832.6 ENSMUSP00000044217.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039832.6Link to Ensembl Protein Viewer:ENSMUSP00000044217.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039832Re-query CCDS DB by Protein ID:ENSMUSP00000044217
Original member Current member EBI ENSMUST00000166224.7 ENSMUSP00000132011.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166224.7Link to Ensembl Protein Viewer:ENSMUSP00000132011.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166224Re-query CCDS DB by Protein ID:ENSMUSP00000132011
Original member Current member EBI ENSMUST00000222783.1 ENSMUSP00000152848.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222783.1Link to Ensembl Protein Viewer:ENSMUSP00000152848.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222783Re-query CCDS DB by Protein ID:ENSMUSP00000152848
Original member Current member NCBI NM_008291.3 NP_032317.2 Accepted alive Link to Nucleotide Sequence:NM_008291.3Link to Protein Sequence:NP_032317.2Re-query CCDS DB by Nucleotide ID:NM_008291Re-query CCDS DB by Protein ID:NP_032317Link to BLAST:NP_032317.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032317.2 305 P70385 305 100% 0 0

Chromosomal Locations for CCDS 26594.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 64058569 64058679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64059419 64059565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64062880 64062945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64063088 64063169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64064349 64064383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64068284 64068319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64071984 64072051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64073837 64073944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64076348 64076423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64087171 64087217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64088987 64089128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGAGAAGCTCTTCATTGCTGCAGGGCTCTTCGTGGGCCTGGTTTGCCTGGTGAAGTGCATGAGGTTCT
CGCAGCACCTTTTTCTGAGGTTCTGCAAGGCTTTGCCAAGCTCTTTCCTGCGATCAATGGGACAATGGGC
AGTGATTACCGGAGCAGGCGATGGCATCGGGAAAGCCTATTCATTTGAGTTGGCCAGACATGGACTCAAT
GTTGTACTTATTAGTCGGACACTGGAAAAGCTACAGACCATTGCAGAAGAGATTGAGAGGACCACTGGAA
GCTGTGTGAAGATTGTACAAGCAGATTTTACCAGAGAAGACATCTATGACCATATTAAAGAACACCTTGA
AGGCTTAGAAATAGGAATTTTAGTCAACAACGTTGGAATGCTCCCCAGCTTTTTCCCAAGCCATTTCCTG
AGCACTTCCGGTGAGAGCCAGAATCTCATCCACTGCAACATTACCTCCGTAGTCAAGATGACACAGCTTG
TTCTCAAACACATGGAGTCAAGGAGGAAAGGCCTCATCTTGAATATTTCTTCAGGCGCAGCCCTTCGTCC
CTGGCCTCTTTACAGCCTGTACTCAGCTTCCAAGGCTTTTGTGTACACATTTTCCAAGGCTCTGAGTGTG
GAATACAGAGATAAAGGAATCATTATTCAGGTGCTGACCCCTTATTCTATTTCAACCCCAATGACAAAGT
ACCTAAATAACAAGATGACCAAGACCGCCGATGAGTTTGTTAAAGAATCCTTGAAATATGTCACGATCGG
AGCTGAATCCTGTGGCTGCCTTGCTCATGAAATCATTGCAATAATTCTGAACCGGATCCCTTCCAGAATC
TTCTATAGCAGCACCGCTCAACGATTCCTCCTGACACGATACTCAGATTACCTCAAACGCAACATCAGCA
ACAGATAG

Translation (305 aa):
MEKLFIAAGLFVGLVCLVKCMRFSQHLFLRFCKALPSSFLRSMGQWAVITGAGDGIGKAYSFELARHGLN
VVLISRTLEKLQTIAEEIERTTGSCVKIVQADFTREDIYDHIKEHLEGLEIGILVNNVGMLPSFFPSHFL
STSGESQNLIHCNITSVVKMTQLVLKHMESRRKGLILNISSGAALRPWPLYSLYSASKAFVYTFSKALSV
EYRDKGIIIQVLTPYSISTPMTKYLNNKMTKTADEFVKESLKYVTIGAESCGCLAHEIIAIILNRIPSRI
FYSSTAQRFLLTRYSDYLKRNISNR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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