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Report for CCDS26595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26595.1 Public Mus musculus 13 Slc35d2 23 108 98 CCDS HistoryNCBI Gene:70484Re-query CCDS DB by CCDS ID:26595.1Re-query CCDS DB by GeneID:70484See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26595.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099441.5 ENSMUSP00000097040.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099441.5Link to Ensembl Protein Viewer:ENSMUSP00000097040.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099441Re-query CCDS DB by Protein ID:ENSMUSP00000097040
Original member Current member NCBI NM_001001321.3 NP_001001321.2 Accepted alive Link to Nucleotide Sequence:NM_001001321.3Link to Protein Sequence:NP_001001321.2Re-query CCDS DB by Nucleotide ID:NM_001001321Re-query CCDS DB by Protein ID:NP_001001321Link to BLAST:NP_001001321.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001321.2 326 Q762D5-1 326 99.6933% 0 1

Chromosomal Locations for CCDS 26595.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 64097582 64097684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64098315 64098397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64099270 64099348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64104733 64104800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64107015 64107107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64108325 64108427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64111516 64111584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64112930 64113001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64118416 64118483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64120595 64120681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64122319 64122352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64129186 64129307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGAGGAGCCCAACGCGGCGCCGTTGCCCTCTCGCCTGGCCAGGCTGCTGTCGGCGCTCTTCTATGGCA
CATGCTCCTTCCTCATCGTGCTGGTCAACAAGGCGCTGCTGACCACATACGGTTTTCCCTCACCAATTGT
ACTTGGAATTGGACAGATGGCTACCACCATAATGATATTGTATGTGTTCAAGCTAAATAAAATAATCCAT
TTCCCTGATTTTGACAAGAAAATTCCTGGAAAGCTGTTCCCTCTGCCCCTTCTCTACGTTGGAAACCACA
TAAGTGGCTTATCAAGCACAAGTAAATTAAGCTTGCCGATGTTCACCGTGCTCAGGAAGTTTACGATTCC
ATTCACTTTACTCCTGGAGGCTATCATACTTGGGACACAATATTCATTGAACATCATCCTCAGCGTCTTG
GCCATCGTTCTTGGGGCGTTCATAGCAGCTGGCTCTGACCTCACATTCAACTTGGAAGGCTACATTTTTG
TATTCTTGAATGATATCTTCACCGCGGCAAATGGAGTTTATACCAAACAGAAAATGGACCCGAAGGAGCT
GGGGAAATATGGAGTGCTTTTCTATAATGCCTGCTTCATGCTCATCCCAACTGTCATTATTAGCGTCTCT
ACTGGAGACTTTCAGCAGGCCACTGAATTCAGACACTGGAAGAATGTCTTATTTATCATACAGTTTCTCC
TTTCCTGTCTTTTGGGGTTTCTCCTGATGTACTCCACAGCTCTTTGCAGTTATTACAACTCAGCTCTGAC
CACAGCGGTGGTTGGAGCGATCAAGAATGTATCGGTTGCCTACATTGGGATGTTGGTTGGTGGAGACTAC
ATTTTCTCCCTCTTAAACTTTATAGGGTTAAATATTTGCATGGCAGGTGGTTTAAGATATTCCTTTTTAA
CACTCAGCAGCCAGTTGAAACCTAAACAACCTGTGGATGAAGAAAGCATCCCTCTGGATCTGAAGAGCTA
G

Translation (326 aa):
MEEPNAAPLPSRLARLLSALFYGTCSFLIVLVNKALLTTYGFPSPIVLGIGQMATTIMILYVFKLNKIIH
FPDFDKKIPGKLFPLPLLYVGNHISGLSSTSKLSLPMFTVLRKFTIPFTLLLEAIILGTQYSLNIILSVL
AIVLGAFIAAGSDLTFNLEGYIFVFLNDIFTAANGVYTKQKMDPKELGKYGVLFYNACFMLIPTVIISVS
TGDFQQATEFRHWKNVLFIIQFLLSCLLGFLLMYSTALCSYYNSALTTAVVGAIKNVSVAYIGMLVGGDY
IFSLLNFIGLNICMAGGLRYSFLTLSSQLKPKQPVDEESIPLDLKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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