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Report for CCDS26612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26612.1 Public Mus musculus 13 Ptdss1 23 108 98 CCDS HistoryNCBI Gene:19210Re-query CCDS DB by CCDS ID:26612.1Re-query CCDS DB by GeneID:19210See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26612.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021990.3 ENSMUSP00000021990.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021990.3Link to Ensembl Protein Viewer:ENSMUSP00000021990.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021990Re-query CCDS DB by Protein ID:ENSMUSP00000021990
Original member Current member NCBI NM_008959.3 NP_032985.2 Accepted alive Link to Nucleotide Sequence:NM_008959.3Link to Protein Sequence:NP_032985.2Re-query CCDS DB by Nucleotide ID:NM_008959Re-query CCDS DB by Protein ID:NP_032985Link to BLAST:NP_032985.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032985.2 473 Q99LH2 473 100% 0 0

Chromosomal Locations for CCDS 26612.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 66933508 66933686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66945277 66945368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66953520 66953564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66956382 66956506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66963313 66963471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66966390 66966541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66972494 66972635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66974445 66974557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66976746 66976811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66987754 66987853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66993953 66994021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66995347 66995416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66996968 66997077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCGTCCTGCGTGGGGAGCAGGACTCTGAGCAAGGATGATGTGAACTACAGGATGCATTTCCGCATGA
TCAACGAGCAGCAAGTGGAGGACATCACCATAGACTTCTTCTACCGGCCGCACACCATCACCCTGCTCAG
CTTCACCATCATCAGCCTCATGTACTTCGCCTTCACCAGGGATGACTCTGTTCCGGAAGACAACATCTGG
AGAGGCATCCTGTCTGTTATCTTCTTCTTTCTCATCATCAGCGTGTTAGCATTCCCCAATGGTCCATTTA
CTCGACCTCATCCAGCCTTATGGCGAATGGTTTTTGGTCTCAGTGTGTTGTATTTCCTCTTCTTGGTATT
CCTCCTTTTCCTGAACTTCGAGCAGGTTAAATCCCTGATGTATTGGCTGGATCCCAATCTTCGATATGCT
ACACGAGAAGCGGACATCATGGAGTATGCTGTGAACTGTCATGTGATAACCTGGGAGAGAATCGTTAGTC
ACTTTGATATATTTGCATTTGGCCATTTCTGGGGCTGGGCCATGAAGGCCTTGTTGATCCGTAGTTATGG
GCTTTGCTGGACAATCAGTATCACCTGGGAGCTGACAGAGCTTTTCTTCATGCATCTCCTGCCCAATTTT
GCTGAGTGCTGGTGGGACCAAGTCATTCTGGACATCCTGTTGTGCAATGGTGGTGGAATCTGGCTGGGCA
TGGTCGTTTGCCGGTTTCTGGAGATGAGAACTTACCACTGGGCAAGCTTCAAGGACATCCACACCACCAC
AGGGAAGATCAAGCGAGCTGTGCTGCAGTTCACCCCTGCTAGCTGGACTTACGTCAGGTGGTTTGATCCC
AAGTCTTCCTTTCAGAGAGTGGCTGGTATATACCTCTTCATGATCATATGGCAGTTGACTGAGTTGAATA
CCTTCTTCTTGAAGCACATCTTTGTGTTCCAAGCCAGCCATCCCTTAAGCTGGGGTAGAATCCTCTTCAT
CGGCTGCATTACGGCTCCCACAGTGAGACAGTACTATGCCTACCTCACGGACACACAGTGCAAGCGTGTA
GGGACACAGTGCTGGGTGTTTGGGGTCATTGGTTTCCTGGAAGCTATTGTTTGCATAAAATTTGGACAAG
ATCTCTTTTCTAAGACCCAGATACTCTATGTGATGCTTTGGCTTCTTTGTGTGGCCTTCACCACGTTCCT
GTGTCTGTACGGCATGGTTTGGTATGCAGAGCACTATGGTCACCGGGAAAAGACCTATTCAGAGTGTGAA
GATGGCACTTACAGTCCAGAGATCTCCTGGCATCATGGGAAAGGCTCCAAAGGTTCTGAAGACAGCCCAC
CGAAGCATTCAAGCAACCACGAAAGCCATTCTTCCAGAAGAAGGAACCGGCATTCTAAGTCCAAAGTCAC
TAATGGAGTTGGAAAGAAATGA

Translation (473 aa):
MASCVGSRTLSKDDVNYRMHFRMINEQQVEDITIDFFYRPHTITLLSFTIISLMYFAFTRDDSVPEDNIW
RGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGLSVLYFLFLVFLLFLNFEQVKSLMYWLDPNLRYA
TREADIMEYAVNCHVITWERIVSHFDIFAFGHFWGWAMKALLIRSYGLCWTISITWELTELFFMHLLPNF
AECWWDQVILDILLCNGGGIWLGMVVCRFLEMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFDP
KSSFQRVAGIYLFMIIWQLTELNTFFLKHIFVFQASHPLSWGRILFIGCITAPTVRQYYAYLTDTQCKRV
GTQCWVFGVIGFLEAIVCIKFGQDLFSKTQILYVMLWLLCVAFTTFLCLYGMVWYAEHYGHREKTYSECE
DGTYSPEISWHHGKGSKGSEDSPPKHSSNHESHSSRRRNRHSKSKVTNGVGKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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