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Report for CCDS26709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26709.1 Public Mus musculus 13 Hexb 23 108 98 CCDS HistoryNCBI Gene:15212Re-query CCDS DB by CCDS ID:26709.1Re-query CCDS DB by GeneID:15212See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022169.9 ENSMUSP00000022169.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022169.9Link to Ensembl Protein Viewer:ENSMUSP00000022169.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022169Re-query CCDS DB by Protein ID:ENSMUSP00000022169
Original member Current member NCBI NM_010422.2 NP_034552.1 Accepted alive Link to Nucleotide Sequence:NM_010422.2Link to Protein Sequence:NP_034552.1Re-query CCDS DB by Nucleotide ID:NM_010422Re-query CCDS DB by Protein ID:NP_034552Link to BLAST:NP_034552.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034552.1 536 P20060 536 100% 0 0

Chromosomal Locations for CCDS 26709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 97176529 97176589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97176797 97176901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97177056 97177146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97177880 97178054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97179344 97179416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97181082 97181168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97181833 97182013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97183677 97183806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97185568 97185669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97188962 97189072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97189306 97189352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97191213 97191278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97194122 97194267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97198026 97198261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGCCGCAGTCCCCGCGTAGCGCCCCCGGGCTGCTGCTGCTGCAGGCGCTGGTGTCGCTAGTGTCGCTGG
CCCTAGTGGCCCCGGCCCGACTGCAACCTGCGCTATGGCCCTTCCCGCGCTCGGTGCAGATGTTCCCGCG
GCTGTTGTACATCTCCGCGGAGGACTTCAGCATCGACCACAGTCCCAATTCCACAGCGGGCCCTTCCTGC
TCGCTGCTACAGGAGGCGTTTCGGCGATATTACAACTATGTTTTTGGTTTCTACAAGAGACATCATGGCC
CTGCTAGATTTCGAGCTGAGCCACAGTTGCAGAAGCTCCTGGTCTCCATTACCCTCGAGTCAGAGTGCGA
GTCCTTCCCTAGTCTGTCTTCAGATGAAACCTATTCTCTGCTTGTACAAGAACCAGTAGCCGTCCTCAAG
GCCAACAGCGTTTGGGGAGCGTTACGAGGTTTAGAGACGTTTAGCCAGTTAGTTTACCAAGACTCTTTCG
GGACTTTCACCATCAATGAATCCAGTATAGCTGATTCTCCAAGATTCCCTCATAGAGGAATTTTAATTGA
TACATCTAGACACTTCCTGCCTGTGAAGACAATTTTAAAAACTCTGGATGCCATGGCTTTTAATAAGTTT
AATGTTCTTCACTGGCACATAGTGGACGACCAGTCTTTCCCTTATCAGAGTACCACTTTTCCTGAGCTAA
GCAATAAGGGAAGCTACTCTTTGTCTCATGTCTATACACCAAACGATGTCCGGATGGTGCTGGAGTACGC
CCGGCTCCGAGGGATTCGAGTCATACCAGAATTTGATACCCCTGGCCATACACAGTCTTGGGGCAAAGGA
CAGAAAAACCTTCTAACTCCATGTTACAATCAAAAAACTAAAACTCAAGTGTTTGGGCCTGTAGACCCAA
CTGTAAACACAACGTATGCATTCTTTAACACATTTTTCAAAGAAATCAGCAGTGTGTTTCCAGATCAGTT
CATCCACTTGGGAGGAGATGAAGTAGAATTTCAATGTTGGGCATCAAATCCAAACATCCAAGGTTTCATG
AAGAGAAAGGGCTTTGGCAGCGATTTTAGAAGACTAGAATCCTTTTATATTAAAAAGATTTTGGAAATTA
TTTCATCCTTAAAGAAGAACTCCATTGTTTGGCAAGAAGTTTTTGATGATAAGGTGGAGCTTCAGCCGGG
CACAGTAGTCGAAGTGTGGAAGAGTGAGCATTATTCATATGAGCTAAAGCAAGTCACAGGCTCTGGCTTC
CCTGCCATCCTTTCTGCTCCTTGGTACTTAGACCTGATCAGCTATGGGCAAGACTGGAAAAACTACTACA
AAGTTGAGCCCCTTAATTTTGAAGGCTCTGAGAAGCAGAAACAACTTGTTATTGGTGGAGAAGCTTGCCT
GTGGGGAGAATTTGTGGATGCAACTAACCTTACTCCAAGATTATGGCCTCGAGCAAGCGCTGTTGGTGAG
AGACTCTGGAGCCCTAAAACTGTCACTGACCTAGAAAATGCCTACAAACGACTGGCCGTGCACCGCTGCA
GAATGGTCAGCCGTGGAATAGCTGCACAACCTCTCTATACTGGATACTGTAACTATGAGAATAAAATATA
G

Translation (536 aa):
MPQSPRSAPGLLLLQALVSLVSLALVAPARLQPALWPFPRSVQMFPRLLYISAEDFSIDHSPNSTAGPSC
SLLQEAFRRYYNYVFGFYKRHHGPARFRAEPQLQKLLVSITLESECESFPSLSSDETYSLLVQEPVAVLK
ANSVWGALRGLETFSQLVYQDSFGTFTINESSIADSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKF
NVLHWHIVDDQSFPYQSTTFPELSNKGSYSLSHVYTPNDVRMVLEYARLRGIRVIPEFDTPGHTQSWGKG
QKNLLTPCYNQKTKTQVFGPVDPTVNTTYAFFNTFFKEISSVFPDQFIHLGGDEVEFQCWASNPNIQGFM
KRKGFGSDFRRLESFYIKKILEIISSLKKNSIVWQEVFDDKVELQPGTVVEVWKSEHYSYELKQVTGSGF
PAILSAPWYLDLISYGQDWKNYYKVEPLNFEGSEKQKQLVIGGEACLWGEFVDATNLTPRLWPRASAVGE
RLWSPKTVTDLENAYKRLAVHRCRMVSRGIAAQPLYTGYCNYENKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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