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Report for CCDS26892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26892.1 Public Mus musculus 14 Chdh 23 108 98 CCDS HistoryNCBI Gene:218865Re-query CCDS DB by CCDS ID:26892.1Re-query CCDS DB by GeneID:218865See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067620.11 ENSMUSP00000065542.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067620.11Link to Ensembl Protein Viewer:ENSMUSP00000065542.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000067620Re-query CCDS DB by Protein ID:ENSMUSP00000065542
Original member Current member EBI ENSMUST00000118917.1 ENSMUSP00000112916.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118917.1Link to Ensembl Protein Viewer:ENSMUSP00000112916.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118917Re-query CCDS DB by Protein ID:ENSMUSP00000112916
Original member Current member NCBI NM_001136240.1 NP_001129712.1 Accepted alive Link to Nucleotide Sequence:NM_001136240.1Link to Protein Sequence:NP_001129712.1Re-query CCDS DB by Nucleotide ID:NM_001136240Re-query CCDS DB by Protein ID:NP_001129712Link to BLAST:NP_001129712.1
Original member Current member NCBI NM_172264.2 NP_758468.2 Accepted alive Link to Nucleotide Sequence:NM_172264.2Link to Protein Sequence:NP_758468.2Re-query CCDS DB by Nucleotide ID:NM_172264Re-query CCDS DB by Protein ID:NP_758468Link to BLAST:NP_758468.2
Original member Current member NCBI NM_175343.5 NP_780552.1 Accepted alive Link to Nucleotide Sequence:NM_175343.5Link to Protein Sequence:NP_780552.1Re-query CCDS DB by Nucleotide ID:NM_175343Re-query CCDS DB by Protein ID:NP_780552Link to BLAST:NP_780552.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129712.1 596 Q8BJ64 596 100% 0 0
NP_758468.2 596 Q8BJ64 596 100% 0 0
NP_780552.1 596 Q8BJ64 596 100% 0 0

Chromosomal Locations for CCDS 26892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 30031136 30031844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30032744 30032895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30033620 30033749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30034610 30034744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30035248 30035390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30035810 30035912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30036472 30036890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGTGGCAGGTCCTTAGAGGCTGGAGGAAAGGATGGCAGAGCCCACGTGGAGCCCTGGCATGGGCTGTGC
AGGGCCAGCCATGCCCCCCTTGCAGCCGCGCTGTTGCCAGTGTGGGCAAGGATGAGTACACCTTTGTGGT
GGTGGGCGCAGGCTCTGCTGGCTGTGTGCTGGCTAGTCGGCTCACCGAGGACCCGAATCATCGGGTGCTG
CTGCTAGAGGCAGGACCTAAGGACTTGTTGATGGGGAGCAAGCGGCTTCAGTGGAAGATCCACATGCCGG
CTGCCCTTGTGTCCAACCTGTGTGATGACAAATACAACTGGTACTATCACACTGAGCCTCAGCCCGGCAT
GGACAGTCGCGTGCTGTACTGGCCACGAGGCCGGGTCTGGGGTGGCTCCTCATCCCTCAATGCCATGGTC
TACATCCGAGGACACGCCGAGGACTATAACCGCTGGCACCGTGAAGGTGCTGAGGGTTGGGACTATGCAC
ACTGCCTGCCCTACTTCCGCAAGGCGCAGAGACATGAGCTGGGTGCCAATATGTACCGCGGTGGGGATGG
CCCACTGCATGTGTCTCGGGGCAAGACCAACCACCCGCTTCACCAGGCCTTCCTGCAGGCAGCACGTCAG
GCTGGCTACCCCTTCACTGAAGACATGAATGGCTTCCAACAGGAGGGCTTCGGCTGGATGGACATGACTG
TCCACCAAGGGAAGCGCTGGAGCACAGCCTGCGCCTACTTGCACCCGGTGCTGAGCCGCCCCAACCTCAG
GGCCGAGGTCCAGACACTTGTAAGCAGAGTGCTGTTTGAGGGCACCCGTGCAGTAGGTGTGGAGTACATC
AAGGACGGCCAGAGACACAAGGCTTACGTCAGCAGGGAGGTGATCCTGAGCGGGGGAGCCATCAACTCTC
CACAGCTGCTCATGCTCTCTGGCGTTGGCAATGCAGATGACCTCAGGAAACTGGATATCCCTGTGGTGTG
CCACCTGCCTGGAGTTGGGCAGAACCTGCAGGACCACCTGGAGGTCTACGTTCAGCAAGCGTGCACACAG
CCCATCACCCTCCACTCTGCCCAGAAGCCTCTGCGGAAGGTCTGCATCGGCCTGGAGTGGCTCTGGAGCT
ACACAGGGGACGGAGCCACAGCCCATCTTGAGACCGGAGGGTTCATCCGCAGCCGACCTGGGGTCCCTCA
TCCGGACATCCAGTTCCACTTCCTGCCATCGCAAGTGATTGACCATGGGCGGAAACCCACCCAGCAGGAA
GCTTACCAGGTGCACGTGGGAACCATGAGGGCCACAAGTGTGGGCTGGCTGAAACTGAGAAGTGCCAACC
CCCGGGACCACCCTGTGATCCATCCCAACTACTTGTCAACAGAAACCGATGTCGAGGACTTCCGTCAGTG
TGTGAGGCTGTCACGAGAAATTTTTGCCCAGGAAGCCTTGGCTCCATTTCGGGGAAAAGAGCTGCAGCCC
GGAAGCCACGTCCAGTCAGACAAAGAGATAGATGCCTTTGTGCGGGCAAAAGCAGACAGTGCTTACCACC
CCTCGTGCACCTGTAAGATGGGCCGGTCCTCTGACCCCACTGCCGTGGTTGACGCGCAAACCAAGGTCAT
CGGCGTAGAAAACCTCAGGGTCGTTGATGCCTCCATCATGCCCAGCGTGGTCAGCGGCAACCTGAACGCT
CCCACGGTAATGATTGCAGAGAAAGCAGCCGACATTATTAAGGGACACCCTGCACTTGAGGACAAGAATG
TTCCTGTCTACAAGCCCCAGACTCTGGACACCCAGCGTTAA

Translation (596 aa):
MWQVLRGWRKGWQSPRGALAWAVQGQPCPPCSRAVASVGKDEYTFVVVGAGSAGCVLASRLTEDPNHRVL
LLEAGPKDLLMGSKRLQWKIHMPAALVSNLCDDKYNWYYHTEPQPGMDSRVLYWPRGRVWGGSSSLNAMV
YIRGHAEDYNRWHREGAEGWDYAHCLPYFRKAQRHELGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQ
AGYPFTEDMNGFQQEGFGWMDMTVHQGKRWSTACAYLHPVLSRPNLRAEVQTLVSRVLFEGTRAVGVEYI
KDGQRHKAYVSREVILSGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHLEVYVQQACTQ
PITLHSAQKPLRKVCIGLEWLWSYTGDGATAHLETGGFIRSRPGVPHPDIQFHFLPSQVIDHGRKPTQQE
AYQVHVGTMRATSVGWLKLRSANPRDHPVIHPNYLSTETDVEDFRQCVRLSREIFAQEALAPFRGKELQP
GSHVQSDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLNA
PTVMIAEKAADIIKGHPALEDKNVPVYKPQTLDTQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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