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Report for CCDS26903.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26903.2 Under review, update Mus musculus 14 Spcs1 23 108 98 CCDS HistoryNCBI Gene:69019Re-query CCDS DB by CCDS ID:26903.2Re-query CCDS DB by GeneID:69019See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 26903.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation and transcript data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26903.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000186131.6 ENSMUSP00000139654.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186131.6Link to Ensembl Protein Viewer:ENSMUSP00000139654.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186131Re-query CCDS DB by Protein ID:ENSMUSP00000139654
Original member Current member EBI ENSMUST00000226782.1 ENSMUSP00000154282.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226782.1Link to Ensembl Protein Viewer:ENSMUSP00000154282.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226782Re-query CCDS DB by Protein ID:ENSMUSP00000154282
Original member NCBI NM_026911.3 NP_081187.2 Updated not alive Link to Nucleotide Sequence:NM_026911.3Link to Protein Sequence:NP_081187.2Re-query CCDS DB by Nucleotide ID:NM_026911Re-query CCDS DB by Protein ID:NP_081187
Current member NCBI NM_026911.4 NP_081187.3 Pending alive Link to Nucleotide Sequence:NM_026911.4Link to Protein Sequence:NP_081187.3Re-query CCDS DB by Nucleotide ID:NM_026911Re-query CCDS DB by Protein ID:NP_081187Link to BLAST:NP_081187.3

Chromosomal Locations for CCDS 26903.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 31000097 31000222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31000678 31000764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31000844 31000903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31001205 31001417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGGCGCGGGGCGGGGCCAGGGGTTGTCCGTGCCCCTCGGAGACATCCGCTTCCGGGGCCACGGCCGAAG
TGAAACGCTCGGCTGGTCGGCCTTGCTCTCGATATCGACCCCCGCAAACTTTACTCCTTAATAATCGGCT
ACGTCCGTTTCGTTGTCGGTATCGGTCTTCAGCAACCATGCTGGAACACCTGAGTTCGCTGCCCACCCAG
ATGGATTACAAGGGGCAGAAACTAGCTGAACAGATGTTTCAGGGGATCATTCTTTTTTCTGCAATAGTTG
GGTTTATCTACGGGTACGTGGCTGAACAGTTTGGGTGGACTGTCTACATAGTTATGGCCGGATTTGCTTT
CTCCTGTTTGCTGACACTTCCTCCATGGCCTATCTACCGCCGCCATCCCCTAAAGTGGTTACCTGTTCAA
GACTTAGGCACAGAAGACAAGAAATCAGGGGACAGAAAAATTAAGAGGCATGCTAAAAATAACTGA

Translation (161 aa):
MARGGARGCPCPSETSASGATAEVKRSAGRPCSRYRPPQTLLLNNRLRPFRCRYRSSATMLEHLSSLPTQ
MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYRRHPLKWLPVQ
DLGTEDKKSGDRKIKRHAKNN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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