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Report for CCDS26920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26920.1 Public Mus musculus 14 Chat 23 108 98 CCDS HistoryNCBI Gene:12647Re-query CCDS DB by CCDS ID:26920.1Re-query CCDS DB by GeneID:12647See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26920.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070125.5 ENSMUSP00000070865.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070125.5Link to Ensembl Protein Viewer:ENSMUSP00000070865.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000070125Re-query CCDS DB by Protein ID:ENSMUSP00000070865
Original member Current member NCBI NM_009891.2 NP_034021.1 Accepted alive Link to Nucleotide Sequence:NM_009891.2Link to Protein Sequence:NP_034021.1Re-query CCDS DB by Nucleotide ID:NM_009891Re-query CCDS DB by Protein ID:NP_034021Link to BLAST:NP_034021.1

Chromosomal Locations for CCDS 26920.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 32408745 32409026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32411808 32411945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32418786 32418848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32418984 32419125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32420718 32420840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32423261 32423389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32424154 32424254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32426119 32426288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32446787 32446964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32448929 32449109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32452553 32452606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32453725 32453843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32454558 32454749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32458608 32458673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGCCTATCCTGGAAAAGGTCCCCCCAAAGATGCCTGTACAAGCTTCTAGCTGTGAGGAGGTGCTGGACT
TACCTAAGTTGCCAGTGCCCCCACTGCAGCAAACCCTGGCCACCTACCTTCAGTGCATGCAACACCTGGT
ACCTGAAGAGCAGTTCAGGAAGAGCCAGGCCATTGTGAAGCGGTTTGGGGCCCCTGGTGGCCTGGGTGAG
ACCCTGCAGGAAAAGCTCTTGGAGAGACAGGAGAAGACAGCCAATTGGGTCTCTGAATACTGGCTGAATG
ACATGTATCTAAACAACCGCCTGGCCCTGCCAGTCAACTCTAGCCCTGCTGTGATCTTTGCTCGGCAGCA
CTTCCAAGACACCAATGACCAGCTAAGGTTTGCAGCCAGCCTCATCTCTGGTGTGCTTAGCTACAAGGCT
CTGCTGGACAGCCAATCCATTCCCACTGACTGGGCCAAGGGGCAGCTCTCAGGGCAGCCTCTCTGTATGA
AGCAGTACTACAGACTCTTCTCATCATACCGGCTTCCTGGCCATACCCAGGACACACTGGTGGCCCAGAA
GAGCAGTATCATGCCTGAGCCCGAGCATGTCATCGTGGCCTGCTGCAACCAGTTCTTTGTCTTGGATGTT
GTCATTAATTTCCGCCGTCTCAGTGAGGGTGATCTGTTCACTCAGTTGAGAAAGATAGTCAAAATGGCGT
CCAACGAGGATGAACGCCTGCCTCCAATCGGCCTGCTGACGTCAGACGGGAGGAGCGAGTGGGCCAAGGC
CAGGACGGTCCTCTTAAAAGACTCCACCAACCGGGACTCCCTGGACATGATCGAGCGCTGCATCTGCCTG
GTATGCCTGGATGGTCCAGGCACTGGAGACCTCAGTGACACACACAGGGCCCTCCAGCTCCTTCATGGTG
GAGGCTGCAGCTTGAATGGAGCGAATCGTTGGTATGACAAGTCCCTGCAGTTTGTGGTGGGCCGAGATGG
CACCTGCGGTGTGGTGTGTGAGCACTCCCCTTTTGATGGCATCGTCCTGGTGCAGTGCACGGAGCACCTG
CTGAAACATATGATGACAGGCAACAAGAAGCTCGTCCGAGCTGACTCAGTGAGTGAACTCCCTGCTCCCA
GAAGGCTGAGGTGGAAATGTTCCCCAGAAACTCAAGGCCATCTCGCCTCCTCGGCAGAGAAACTTCAAAG
AATCGTAAAGAATCTGGATTTCATTGTTTATAAGTTTGACAACTATGGGAAAACATTTATTAAGAAGCAG
AAATGCAGTCCTGATGGCTTCATCCAGGTGGCCCTCCAGCTGGCTTACTACAGGCTTTACCAGAGGCTGG
TGCCCACCTATGAGAGTGCATCCATCCGCCGCTTCCAGGAAGGTCGGGTGGACAACATCAGATCGGCCAC
TCCTGAGGCTCTGGCTTTTGTGCAAGCCATGACTGACCACAAGGCTGCCGTGCTGGCTTCTGAGAAACTG
CAGCTGCTGCAGAGGGCCATCCAGGCCCAAACTGAGTACACAGTCATGGCCATAACCGGCATGGCCATTG
ACAACCATCTTCTGGCACTGAGGGAGCTGGCCCGAGACCTGTGCAAAGAGCCACCTGAGATGTTCATGGA
TGAAACATACCTGATGAGCAACCGGTTTATTCTCTCCACCAGCCAGGTGCCCACGACCATGGAGATGTTC
TGCTGTTATGGCCCTGTGGTACCCAATGGGTATGGAGCCTGTTATAACCCCCAGCCTGAGGCCATCACCT
TCTGCATCTCCAGCTTTCACGGCTGCAAAGAGACCTCATCTGTGGAGTTTGCAGAAGCGGTGGGAGCGAG
CCTTGTTGACATGAGAGACCTCTGTAGTTCGAGGCAGCCTGCTGAAGGCAAGCCACCAACAGCAAAGGAA
AGAGCTAGAGGCCCAACCAAGCCAAGCAATCTTGACTACTCCCACTAG

Translation (645 aa):
MPILEKVPPKMPVQASSCEEVLDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGE
TLQEKLLERQEKTANWVSEYWLNDMYLNNRLALPVNSSPAVIFARQHFQDTNDQLRFAASLISGVLSYKA
LLDSQSIPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQDTLVAQKSSIMPEPEHVIVACCNQFFVLDV
VINFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLDMIERCICL
VCLDGPGTGDLSDTHRALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHL
LKHMMTGNKKLVRADSVSELPAPRRLRWKCSPETQGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQ
KCSPDGFIQVALQLAYYRLYQRLVPTYESASIRRFQEGRVDNIRSATPEALAFVQAMTDHKAAVLASEKL
QLLQRAIQAQTEYTVMAITGMAIDNHLLALRELARDLCKEPPEMFMDETYLMSNRFILSTSQVPTTMEMF
CCYGPVVPNGYGACYNPQPEAITFCISSFHGCKETSSVEFAEAVGASLVDMRDLCSSRQPAEGKPPTAKE
RARGPTKPSNLDYSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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