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Report for CCDS271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
271.1 Public Homo sapiens 1 EXTL1 24 110 108 CCDS HistoryNCBI Gene:2134Re-query CCDS DB by CCDS ID:271.1Re-query CCDS DB by GeneID:2134See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374280.4 ENSP00000363398.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374280.4Link to Ensembl Protein Viewer:ENSP00000363398.3Re-query CCDS DB by Nucleotide ID:ENST00000374280Re-query CCDS DB by Protein ID:ENSP00000363398
Original member Current member NCBI NM_004455.3 NP_004446.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004455.3Link to Protein Sequence:NP_004446.2Re-query CCDS DB by Nucleotide ID:NM_004455Re-query CCDS DB by Protein ID:NP_004446Link to BLAST:NP_004446.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004446.2 676 Q92935 676 100% 0 0

Chromosomal Locations for CCDS 271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26022647 26023425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26029193 26029286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26029600 26029707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26030476 26030595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26031132 26031264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26031460 26031566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26032396 26032485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26033229 26033315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26033696 26033856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26034836 26035004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26035165 26035347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGCAGTCGTGGAGGAGAAGAAAGTCCCTGTGGCTGGCACTGTCAGCCTCCTGGCTCCTGCTTGTCCTGC
TGGGAGGCTTCTCCCTTCTCCGCCTGGCATTGCCTCCCAGACCTCGGCCCGGGGCTTCCCAAGGCTGGCC
CCGCTGGCTGGATGCAGAGCTCCTGCAGAGCTTCTCCCAGCCTGGAGAGCTCCCAGAAGATGCCGTTTCA
CCTCCTCAAGCCCCTCATGGTGGCAGCTGCAACTGGGAATCTTGCTTTGATACCTCAAAGTGCAGGGGCG
ATGGCCTTAAGGTATTCGTGTACCCAGCGGTTGGAACCATCTCTGAGACTCATCGCAGGATCCTGGCTTC
CATTGAGGGCTCTCGCTTCTACACATTCAGCCCTGCTGGGGCCTGCCTCCTCCTCCTCCTCAGCCTGGAC
GCCCAGACTGGAGAGTGCAGCTCAATGCCTCTGCAATGGAACAGGGGCAGGAACCATCTGGTCCTCCGTC
TCCACCCGGCTCCCTGCCCCAGGACCTTCCAGCTGGGACAGGCTATGGTGGCTGAGGCCAGCCCCACGGT
GGACTCCTTCCGGCCCGGCTTTGATGTGGCCCTCCCTTTTCTCCCTGAAGCCCACCCGTTGCGAGGTGGG
GCTCCTGGCCAGCTGCGGCAACACAGCCCCCAGCCCGGGGTAGCCCTGCTAGCCCTGGAAGAGGAGAGGG
GTGGGTGGCGCACAGCAGACACTGGCTCCTCTGCCTGCCCCTGGGATGGGCGCTGTGAGCAAGACCCTGG
ACCTGGGCAGACCCAGCGCCAGGAGACGCTGCCCAATGCCACCTTCTGCCTCATCTCTGGCCACCGTCCC
GAGGCTGCCTCGCGCTTCCTCCAAGCCCTGCAGGCCGGCTGCATCCCAGTGCTTCTCAGCCCCCGCTGGG
AGCTGCCCTTCTCCGAGGTCATCGACTGGACCAAGGCAGCCATCGTAGCTGATGAGAGGCTCCCACTTCA
GGTCCTGGCTGCCCTCCAGGAGATGTCCCCTGCACGGGTCCTCGCCCTGCGTCAGCAGACCCAGTTTCTA
TGGGATGCCTACTTCTCCTCAGTGGAGAAGGTCATCCATACCACTCTGGAGGTTATTCAGGACCGGATTT
TTGGAACATCAGCTCACCCCTCACTGCTGTGGAACAGCCCCCCAGGGGCACTCCTGGCCCTGTCTACTTT
TTCCACAAGCCCCCAGGACTTCCCCTTCTACTACCTGCAACAGGGCTCCCGCCCTGAGGGCAGATTCAGC
GCCCTGATCTGGGTGGGGCCCCCAGGCCAGCCCCCTCTGAAGCTCATCCAGGCGGTGGCAGGCTCCCAGC
ACTGTGCCCAGATCTTGGTTCTCTGGAGCAATGAGAGGCCACTCCCATCCAGGTGGCCGGAGACAGCTGT
GCCCTTGACAGTCATTGATGGGCACAGGAAGGTTAGTGATCGCTTCTACCCATATAGCACCATCAGAACA
GATGCCATCCTCAGCCTCGATGCCCGCAGCAGTCTTTCCACAAGTGAGGTGGACTTTGCCTTTCTGGTGT
GGCAGAGCTTCCCAGAGCGGATGGTGGGCTTCCTGACGTCGAGCCATTTCTGGGACGAGGCCCATGGTGG
CTGGGGCTACACTGCTGAGAGGACCAACGAATTCTCCATGGTTCTCACCACAGCCGCCTTCTACCATAGG
TATTACCACACTCTCTTCACCCACTCCCTGCCCAAGGCTCTGAGGACCCTGGCAGATGAGGCACCCACCT
GTGTGGACGTCCTGATGAATTTCATAGTAGCAGCAGTCACCAAGCTGCCCCCTATCAAGGTGCCCTATGG
CAAGCAGCGCCAGGAGGCTGCTCCACTGGCGCCTGGGGGCCCGGGGCCCAGGCCAAAGCCGCCTGCCCCA
GCCCCCGACTGCATCAACCAGATAGCGGCAGCGTTCGGCCACATGCCCTTGCTGTCCTCTCGTCTGCGTC
TGGACCCGGTGCTGTTTAAGGACCCGGTGTCCGTGCAGCGCAAGAAGTACCGCAGCCTGGAGAAGCCCTA
G

Translation (676 aa):
MQSWRRRKSLWLALSASWLLLVLLGGFSLLRLALPPRPRPGASQGWPRWLDAELLQSFSQPGELPEDAVS
PPQAPHGGSCNWESCFDTSKCRGDGLKVFVYPAVGTISETHRRILASIEGSRFYTFSPAGACLLLLLSLD
AQTGECSSMPLQWNRGRNHLVLRLHPAPCPRTFQLGQAMVAEASPTVDSFRPGFDVALPFLPEAHPLRGG
APGQLRQHSPQPGVALLALEEERGGWRTADTGSSACPWDGRCEQDPGPGQTQRQETLPNATFCLISGHRP
EAASRFLQALQAGCIPVLLSPRWELPFSEVIDWTKAAIVADERLPLQVLAALQEMSPARVLALRQQTQFL
WDAYFSSVEKVIHTTLEVIQDRIFGTSAHPSLLWNSPPGALLALSTFSTSPQDFPFYYLQQGSRPEGRFS
ALIWVGPPGQPPLKLIQAVAGSQHCAQILVLWSNERPLPSRWPETAVPLTVIDGHRKVSDRFYPYSTIRT
DAILSLDARSSLSTSEVDFAFLVWQSFPERMVGFLTSSHFWDEAHGGWGYTAERTNEFSMVLTTAAFYHR
YYHTLFTHSLPKALRTLADEAPTCVDVLMNFIVAAVTKLPPIKVPYGKQRQEAAPLAPGGPGPRPKPPAP
APDCINQIAAAFGHMPLLSSRLRLDPVLFKDPVSVQRKKYRSLEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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