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Report for CCDS27332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27332.1 Public Mus musculus 14 Tgds 23 108 98 CCDS HistoryNCBI Gene:76355Re-query CCDS DB by CCDS ID:27332.1Re-query CCDS DB by GeneID:76355See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022727.9 ENSMUSP00000022727.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022727.9Link to Ensembl Protein Viewer:ENSMUSP00000022727.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022727Re-query CCDS DB by Protein ID:ENSMUSP00000022727
Original member Current member NCBI NM_029578.3 NP_083854.3 Accepted alive Link to Nucleotide Sequence:NM_029578.3Link to Protein Sequence:NP_083854.3Re-query CCDS DB by Nucleotide ID:NM_029578Re-query CCDS DB by Protein ID:NP_083854Link to BLAST:NP_083854.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083854.3 355 Q8VDR7 355 100% 0 0

Chromosomal Locations for CCDS 27332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 118113072 118113157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118114313 118114410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118115117 118115175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118116079 118116244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118116970 118117013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118117737 118117796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118119640 118119738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118121719 118121861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118127495 118127585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118128223 118128291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118130607 118130673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118132644 118132729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGTCCGCTGCGAGCCGGGAGGAGCGTTCTGGTCCTCCCGGCAGCTTCGCGAAGCGGGTCCTGGTGACCG
GGGGTGCTGGTTTCATTGCGTCCCATGTGATTGTCTCCCTAGTAGAGGATTATCCCGACTATATGATCGT
AAATCTAGACAAGCTGGATTACTGTGCAAGCTTGAAGAATCTGGAACCAGTCTCTAACAAGCAAAACTAC
AAGTTTATACAGGGTGACATTTGTGATTCTCACTTTGTGAAGTTGCTGTTTGAAGTGGAGAAAATAGATA
TAGTACTGCACTTTGCTGCACAGACACATGTAGATCTTTCATTTGTCCGTGCCTTTGAGTTTACGTACGT
CAATGTTTATGGTACTCATGTTTTGGTAAATGCTGCTTATGAAGCCGGAGTGGAGAAATTTATTTACGTC
AGCACAGATGAAGTTTATGGTGGCAGTCTCGACCAGGAGTTTGATGAATCGTCCCCCAAACAACCTACAA
ACCCTTACGCTTCATCCAAGGCAGCTGCTGAATGTTTTGTGCAGTCTTACTGGGAAAGGTACAAGTTCCC
AGTTGTCATCACGAGAAGCAGCAACGTCTATGGACCACATCAGTATCCAGAAAAGGTTATTCCAAAGTTC
ATATCCTTGCTGCAGCACAACAGGAAGTGCTGTATTCATGGATCAGGGCTTCAAAGGAGAAACTTCCTCT
ATGCTGCTGATGTGGTAGAAGCCTTCCTCACTGTCCTCACAAAGGGCGAGCCAGGCGAGATCTACAACAT
CGGGACCAACTTTGAGATGTCGGTCGTCCAGCTTGCGAAAGAGCTAATACAGCTGATCAAAGAGACCAAT
TCAGAGTCTGAAACGGAGAGCTGGGTGGACTATGTTAGTGACAGACCTCACAATGACATGAGATATCCAA
TGAAGTCTGAAAAAATTCACAGTTTAGGATGGAAGCCCAAAGTGCCATGGGAAGAAGGAATAAAGAAAAC
AGTTGAGTGGTACCGAAAGAATTTTCACAACTGGAAGAATGCAGAAAAGGCATTAGAGCCCTTTCCAGTC
CAGCCACCATTTATGTAA

Translation (355 aa):
MSAASREERSGPPGSFAKRVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNY
KFIQGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAGVEKFIYV
STDEVYGGSLDQEFDESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQYPEKVIPKF
ISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEPGEIYNIGTNFEMSVVQLAKELIQLIKETN
SESETESWVDYVSDRPHNDMRYPMKSEKIHSLGWKPKVPWEEGIKKTVEWYRKNFHNWKNAEKALEPFPV
QPPFM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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