NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27381.1 Public Mus musculus 15 Amacr 23 108 98 CCDS HistoryNCBI Gene:17117Re-query CCDS DB by CCDS ID:27381.1Re-query CCDS DB by GeneID:17117See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27381.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070877.6 ENSMUSP00000066915.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070877.6Link to Ensembl Protein Viewer:ENSMUSP00000066915.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000070877Re-query CCDS DB by Protein ID:ENSMUSP00000066915
Original member NCBI NM_008537.4 NP_032563.2 Updated not alive Link to Nucleotide Sequence:NM_008537.4Link to Protein Sequence:NP_032563.2Re-query CCDS DB by Nucleotide ID:NM_008537Re-query CCDS DB by Protein ID:NP_032563
Current member NCBI NM_008537.5 NP_032563.2 Accepted alive Link to Nucleotide Sequence:NM_008537.5Link to Protein Sequence:NP_032563.2Re-query CCDS DB by Nucleotide ID:NM_008537Re-query CCDS DB by Protein ID:NP_032563Link to BLAST:NP_032563.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032563.2 381 O09174 381 100% 0 0

Chromosomal Locations for CCDS 27381.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 10981810 10982053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10983350 10983493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10984686 10984846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10988759 10988945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10994840 10995249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGTGCTGCGTGGCGTCAGGGTTGTGGAGCTGGCAGGCCTGGCCCCGGGGCCGTTCTGCGGAATGGTCC
TGGCGGACTTCGGCGCCGAGGTGGTGCGCGTGAACCGGCTGGGCTCCACGGGCGAGAATTTTCTGGCCCG
AGGCAAGCGCTCGCTAGCGCTGGACCTGAAGCGCTCTCAGGGAGTCACGGTGTTGCGGCGCATGTGCGCA
CGCGCGGACGTGTTGCTGGAGCCCTTCCGCTGCGGTGTCATGGAGAAACTCCAGCTTGGGCCAGAGACTC
TACTGCAGGACAATCCAAAGCTCATCTATGCCAGGCTGAGCGGATTTGGCCAATCGGGAATTTTCTCCAA
AGTAGCTGGCCATGACATCAACTATTTGGCTTTATCAGGCGTTCTGTCAAAGATTGGCAGAAGCGGTGAG
AACCCCTACCCACCGCTGAATCTCCTGGCTGACTTTGGCGGTGGAGGCCTCATGTGCACACTGGGCATTG
TGCTGGCTCTCTTTGAACGCACACGCTCTGGCCGAGGGCAGGTCATCGATTCAAGCATGGTGGAAGGGAC
TGCATACTTAAGTTCTTTCCTGTGGAAAACCCAGCCCATGGGTCTGTGGAAACAGCCTCGAGGACAAAAC
ATCTTAGATGGCGGTGCACCTTTCTACACAACCTACAAGACGGCAGACGGGGAGTTCATGGCTGTAGGTG
CCATAGAACCCCAGTTCTATGCACTGCTGCTTAAAGGACTTGGACTCGAGTCTGAGGAACTCCCCTCCCA
GATGAGCTCAGCAGATTGGCCAGAGATGAAGAAGAAATTTGCAGATGTGTTTGCAAAGAAGACTAAGGCA
GAATGGTGCCAGATCTTTGACGGGACAGATGCGTGTGTGACCCCAGTGCTGACGTTTGAGGAGGCCCTCC
ACCACCAGCACAACAGAGAACGGGCCTCCTTCATCACTGATGGGGAGCAGCTCCCGAGCCCCCGCCCTGC
ACCTCTGCTTTCCAGAACTCCTGCCGTCCCATCTGCCAAAAGGGACCCTTCTGTAGGGGAGCACACCGTA
GAAGTGCTTAGAGAGTATGGATTCAGTCAGGAAGAGATCCTTCAGCTGCACTCAGATAGAATCGTTGAAA
GTGATAAGCTAAAAGCCAATCTCTGA

Translation (381 aa):
MVLRGVRVVELAGLAPGPFCGMVLADFGAEVVRVNRLGSTGENFLARGKRSLALDLKRSQGVTVLRRMCA
RADVLLEPFRCGVMEKLQLGPETLLQDNPKLIYARLSGFGQSGIFSKVAGHDINYLALSGVLSKIGRSGE
NPYPPLNLLADFGGGGLMCTLGIVLALFERTRSGRGQVIDSSMVEGTAYLSSFLWKTQPMGLWKQPRGQN
ILDGGAPFYTTYKTADGEFMAVGAIEPQFYALLLKGLGLESEELPSQMSSADWPEMKKKFADVFAKKTKA
EWCQIFDGTDACVTPVLTFEEALHHQHNRERASFITDGEQLPSPRPAPLLSRTPAVPSAKRDPSVGEHTV
EVLREYGFSQEEILQLHSDRIVESDKLKANL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH