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Report for CCDS27630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27630.1 Public Mus musculus 15 Gcat 23 108 98 CCDS HistoryNCBI Gene:26912Re-query CCDS DB by CCDS ID:27630.1Re-query CCDS DB by GeneID:26912See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27630.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006544.8 ENSMUSP00000006544.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006544.8Link to Ensembl Protein Viewer:ENSMUSP00000006544.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006544Re-query CCDS DB by Protein ID:ENSMUSP00000006544
Original member Current member NCBI NM_013847.4 NP_038875.3 Accepted alive Link to Nucleotide Sequence:NM_013847.4Link to Protein Sequence:NP_038875.3Re-query CCDS DB by Nucleotide ID:NM_013847Re-query CCDS DB by Protein ID:NP_038875Link to BLAST:NP_038875.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038875.3 416 O88986 416 100% 0 0

Chromosomal Locations for CCDS 27630.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79030934 79031120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79033931 79034061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79034960 79035061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79035257 79035403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79035777 79035931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79036020 79036102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79036267 79036438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79036753 79036874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79037143 79037294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGTGGGCCAGCTTCATGTGGCACGGGGCGCTGTCCCCTGGCCGCCGCGCACATTCAGCGCTGGCTCAGT
TGCGCTGCATCCTGGACAGCGAACTGGAAGGGATCCGCGGAGCCGGCACCTGGAAGAGTGAGCGTGTGAT
CACGTCCCGCCAGGGACCGAGCATCCGCGTGGACGGCATCTCGGGAGGAATCCTCAACTTCTGTGCCAAT
AACTACCTGGGCCTGAGCAGCCACCCTGCAGTGATCCAGGCAGGTCTGCAGACTCTGGAGGAGTTTGGAG
CTGGACTCAGTTCTACTCGATTTATCTGTGGGACCCAGAGCATCCATAAGAATCTAGAAGCCAAGATAGC
CCACTTCCACCAGCGTGAGGACGCCATCCTCTATCCCAGCTGTTTCGATGCCAACGCTGGCCTATTTGAG
GCTTTGCTGACCCCAGAGGATGCGGTTCTGTCAGATGAGCTGAACCATGCTTCCATCATTGACGGCATCC
GACTGTGCAAGGCCCACAAGTACCGTTACCGCCACCTGGACATGGCTGACCTGGAAGCCAAGCTGAAGGA
GGCTCAGAAGCACAGGCTGCGCCTGGTGGCCACAGATGGAGCTTTCTCCATGGATGGTGACATCGCTCCC
CTACAGGACATCTGCCGCCTTGCCGCCCAATATGGTGCCCTGGTCTTTGTGGATGAATGCCATGCCACTG
GCTTTCTTGGGCCCACAGGACGGGGCACAGATGAGCTGCTAGGTGTCATGGACCAGGTCACCATCATCAA
CTCCACCCTGGGGAAGGCGCTGGGTGGAGCATCAGGGGGATATACCACCGGGCCTGAGCCACTGGTGTCC
CTGCTACGGCAGCGTTCTCGGCCCTACCTCTTCTCCAACAGCCTGCCCCCTGCTGTAGTCGGCTGTGCTT
CTAAGGCCCTGGACCTGCTCATGGAGAGCAATGCCATCATCCAGTCTATGGCTGCCAAGACCCGGCGGTT
CCGCAGTAAGATGGAAGCTGCTGGTTTTACTGTCTCAGGAGCCGATCACCCCATCTGCCCTGTGATGCTG
GGAGATGCACGGTTGTCTTCTCAAATGGCAGATGACATGTTAAAGAAAGGTATCTTTGTCATCGGATTTA
GCTACCCTGTGGTCCCTAAGGGCAAGGCCCGGATCCGGGTGCAGATCTCAGCTGTACACAGTGAGGAAGA
CATTGACCGCTGTGTGGAAGCCTTCGTGGAGGTGGGGCGGCTGCATGGAGCTCTGCCCTAA

Translation (416 aa):
MWASFMWHGALSPGRRAHSALAQLRCILDSELEGIRGAGTWKSERVITSRQGPSIRVDGISGGILNFCAN
NYLGLSSHPAVIQAGLQTLEEFGAGLSSTRFICGTQSIHKNLEAKIAHFHQREDAILYPSCFDANAGLFE
ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAKLKEAQKHRLRLVATDGAFSMDGDIAP
LQDICRLAAQYGALVFVDECHATGFLGPTGRGTDELLGVMDQVTIINSTLGKALGGASGGYTTGPEPLVS
LLRQRSRPYLFSNSLPPAVVGCASKALDLLMESNAIIQSMAAKTRRFRSKMEAAGFTVSGADHPICPVML
GDARLSSQMADDMLKKGIFVIGFSYPVVPKGKARIRVQISAVHSEEDIDRCVEAFVEVGRLHGALP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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