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Report for CCDS27636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27636.1 Public Mus musculus 15 Slc16a8 23 108 98 CCDS HistoryNCBI Gene:57274Re-query CCDS DB by CCDS ID:27636.1Re-query CCDS DB by GeneID:57274See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27636.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039752.3 ENSMUSP00000040522.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039752.3Link to Ensembl Protein Viewer:ENSMUSP00000040522.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000039752Re-query CCDS DB by Protein ID:ENSMUSP00000040522
Original member Current member NCBI NM_020516.2 NP_065262.1 Accepted alive Link to Nucleotide Sequence:NM_020516.2Link to Protein Sequence:NP_065262.1Re-query CCDS DB by Nucleotide ID:NM_020516Re-query CCDS DB by Protein ID:NP_065262Link to BLAST:NP_065262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065262.1 492 O35308 492 100% 0 0

Chromosomal Locations for CCDS 27636.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79251128 79251480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79251875 79252642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79252851 79252994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79253594 79253807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGGTGCTGGCGGTCCGAGGCGGGGTGCTGGCCCTCCGGATGGTGGCTGGGGCTGGGTGGTGCTGGGCG
CCTGCTTCGTGGTCACCGGCTTCGCCTATGGCTTCCCTAAGGCTGTGAGCGTCTTCTTCCGAGAGCTCAA
GCGCGACTTTGGGGCAGGTTACAGTGACACAGCCTGGGTGTCCTCCATCATGTTGGCCATGCTCTACGGC
ACGGGCCCCTTGTCCAGCATCCTCGTGACGCGCTTTGGCTGTCGCCCCGTGATGCTGGCTGGTGGACTGC
TGGCTTCAGCAGGCATGATTCTGGCTTCCTTTGCCTCGCGCCTCGTGGAGCTGTACCTGACGGCTGGGGT
GCTCACAGGCCTGGGCCTAGCTCTCAACTTCCAGCCGTCGCTCATCATGCTGGGACTCTACTTCGAGCGG
CGACGGCCCCTGGCCAACGGGCTGGCAGCGGCGGGCAGTCCCGTGTTTCTGTCCATGCTGTCGCCGCTCG
GGCAGCTGCTGGGGGAGCGCTTCGGCTGGCGTGGCGGCTTCCTGCTGTTTGGCGGCCTCCTGCTGCACTG
TTGCGCCTGTGGGGCAGTCATGCGTCCGCCCCCTGGACCCCCGCCGCGCAGAGACCCCTCGCCCCACGGT
GGCCCGGCTCGCCGCCGGCGGCTGCTGGACGTGGCAGTGTGCACCGACCGTGCTTTCGTGGTGTACGTGG
TCACCAAGTTCCTGATGGCACTCGGGCTCTTTGTGCCGGCCATCCTGCTGGTGAACTACGCCAAGGACGC
GGGCGTGCCTGACGCCGAGGCCGCCTTCTTGCTGTCCATCGTGGGCTTCGTGGACATCGTGGCACGACCG
GCGTGCGGTGCTTTGGCGGGTCTGGGGCGCCTGAGACCCCACGTCCCCTACCTCTTCAGCCTGGCCCTGT
TGGCCAATGGGCTCACGGACCTGATTAGCGCGCGTGCGCGCTCCTACGGGACCCTCGTTGCTTTCTGCAT
TGCCTTCGGCCTGTCCTACGGCATGGTGGGCGCACTGCAGTTTGAGGTGCTCATGGCAACCGTGGGTGCA
CCCCGCTTCCCTAGTGCATTGGGCCTAGTGCTGCTCGTGGAGGCCGTGGCTGTGCTCATAGGACCGCCCT
CTGCCGGCCGCCTGGTGGATGCTCTGAAGAACTATGAAATCATCTTCTACCTTGCTGGCTCTGAAGTGGC
CTTGGCAGGAGTCTTCATGGCAGTTACCACCTACTGCTGCCTGCGCTGCTCTAAGAACATCTCATCAGGT
CGATCTGCTGAGGGAGGAGCCAGCGACCCAGAGGATGTGGAGGCTGAGAGGGACTCTGAGCCAATGCCTG
CCAGCACTGAGGAGCCGGGCAGCCTTGAAGCTCTGGAGGTGCTGAGCCCCCGGGCTGGGTCCCCAGAACA
AGAACCAGAGGAGGAGGCAGTGCCTGAGCTGGATCACGAGTCCATAGGTGGCCATGAGGCACGAGGCCAG
AAGGCATGA

Translation (492 aa):
MGAGGPRRGAGPPDGGWGWVVLGACFVVTGFAYGFPKAVSVFFRELKRDFGAGYSDTAWVSSIMLAMLYG
TGPLSSILVTRFGCRPVMLAGGLLASAGMILASFASRLVELYLTAGVLTGLGLALNFQPSLIMLGLYFER
RRPLANGLAAAGSPVFLSMLSPLGQLLGERFGWRGGFLLFGGLLLHCCACGAVMRPPPGPPPRRDPSPHG
GPARRRRLLDVAVCTDRAFVVYVVTKFLMALGLFVPAILLVNYAKDAGVPDAEAAFLLSIVGFVDIVARP
ACGALAGLGRLRPHVPYLFSLALLANGLTDLISARARSYGTLVAFCIAFGLSYGMVGALQFEVLMATVGA
PRFPSALGLVLLVEAVAVLIGPPSAGRLVDALKNYEIIFYLAGSEVALAGVFMAVTTYCCLRCSKNISSG
RSAEGGASDPEDVEAERDSEPMPASTEEPGSLEALEVLSPRAGSPEQEPEEEAVPELDHESIGGHEARGQ
KA


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 Genome Browser Links:   Ensembl Genome Browser
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