NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27753.1 Public Mus musculus 15 Arsa 23 108 98 CCDS HistoryNCBI Gene:11883Re-query CCDS DB by CCDS ID:27753.1Re-query CCDS DB by GeneID:11883See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165199.7 ENSMUSP00000127646.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165199.7Link to Ensembl Protein Viewer:ENSMUSP00000127646.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165199Re-query CCDS DB by Protein ID:ENSMUSP00000127646
Original member Current member NCBI NM_009713.4 NP_033843.2 Accepted alive Link to Nucleotide Sequence:NM_009713.4Link to Protein Sequence:NP_033843.2Re-query CCDS DB by Nucleotide ID:NM_009713Re-query CCDS DB by Protein ID:NP_033843Link to BLAST:NP_033843.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033843.2 506 P50428 506 100% 0 0

Chromosomal Locations for CCDS 27753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89473238 89473557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89473669 89473771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89474007 89474134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89474228 89474352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89474540 89474709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89474787 89475005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89475122 89475362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89475508 89475722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGGCCCTGGGGACCCTCTTTTTGGCATTGGCTGCAGGCCTGAGCACTGCCAGCCCACCTAACATCCTGC
TGATCTTTGCGGATGACCTGGGCTATGGGGACCTCGGCTCCTATGGGCACCCCAGTTCTACCACCCCTAA
CCTGGATCAGTTGGCTGAAGGTGGACTACGGTTCACAGATTTCTATGTGCCTGTGTCTCTGTGCACGCCA
TCTCGGGCCGCCCTCCTGACTGGCCGGCTCCCAGTTCGATCAGGCATGTACCCTGGAGTTCTGGGGCCCA
GTTCCCAAGGGGGCTTGCCCTTGGAGGAGGTGACTTTAGCCGAAGTCCTGGCTGCTCGAGGCTACCTTAC
AGGGATGGCTGGCAAGTGGCATCTTGGAGTGGGGCCAGAGGGGGCCTTCCTGCCCCCGCATCAGGGCTTC
CACCGATTCCTGGGCATCCCATATTCCCATGACCAGGGTCCCTGTCAGAACCTAACGTGCTTCCCACCAG
ACATCCCCTGCAAAGGTGGCTGTGACCAAGGCCTTGTTCCCATCCCACTACTGGCCAACCTGACAGTGGA
GGCCCAGCCCCCTTGGCTGCCTGGACTGGAGGCCCGGTATGTGTCTTTCTCCCGAGACCTCATGGCTGAT
GCCCAGCGCCAGGGCCGACCGTTCTTCCTGTACTACGCTTCCCACCACACTCACTACCCTCAGTTCAGTG
GACAAAGCTTCACCAAGCGCTCAGGCCGTGGGCCATTTGGGGACTCCTTGATGGAGCTGGATGGAGCTGT
AGGGGCCTTGATGACAACTGTGGGGGACCTCGGTCTGCTGGAAGAGACACTAGTCATCTTCACTGCAGAT
AACGGTCCTGAGTTGATGCGCATGTCCAATGGCGGCTGCTCTGGCCTCTTGAGATGTGGAAAAGGAACAA
CTTTTGAAGGTGGCGTCCGAGAGCCTGCCTTGGTCTACTGGCCAGGTCACATTACTCCTGGTGTAACCCA
TGAGCTGGCCAGCTCTCTGGACCTGCTGCCCACCCTGGCAGCCCTGACCGGGGCTCCGCTGCCCAACGTC
ACCTTGGATGGTGTTGACATCAGCCCCTTGCTGCTAGGCACAGGCAAGAGCCCACGGAAGTCTGTCTTCT
TCTACCCGCCCTACCCAGACGAGATCCATGGGGTCTTTGCTGTTCGGAATGGGAAATACAAGGCTCATTT
CTTCACCCAGGGCTCCGCCCACAGTGACACCACTTCAGATCCTGCCTGTCATGCTGCCAACCGTCTGACG
GCTCATGAGCCCCCACTGCTCTACGACTTATCTCAGGACCCTGGGGAGAACTACAATGTTTTGGAAAGTA
TAGAGGGGGTCTCCCCAGAAGCCCTCCAGGCTTTGAAACACATCCAACTCCTCAAGGCCCAGTACGATGC
AGCCATGACCTTTGGCCCCAGCCAGATAGCCAAGGGCGAGGACCCTGCCCTACAGATCTGCTGTCAGCCG
AGCTGCACTCCCCACCCTGTCTGCTGCCACTGCCCAGGCTCCCAGTCCTGA

Translation (506 aa):
MALGTLFLALAAGLSTASPPNILLIFADDLGYGDLGSYGHPSSTTPNLDQLAEGGLRFTDFYVPVSLCTP
SRAALLTGRLPVRSGMYPGVLGPSSQGGLPLEEVTLAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGF
HRFLGIPYSHDQGPCQNLTCFPPDIPCKGGCDQGLVPIPLLANLTVEAQPPWLPGLEARYVSFSRDLMAD
AQRQGRPFFLYYASHHTHYPQFSGQSFTKRSGRGPFGDSLMELDGAVGALMTTVGDLGLLEETLVIFTAD
NGPELMRMSNGGCSGLLRCGKGTTFEGGVREPALVYWPGHITPGVTHELASSLDLLPTLAALTGAPLPNV
TLDGVDISPLLLGTGKSPRKSVFFYPPYPDEIHGVFAVRNGKYKAHFFTQGSAHSDTTSDPACHAANRLT
AHEPPLLYDLSQDPGENYNVLESIEGVSPEALQALKHIQLLKAQYDAAMTFGPSQIAKGEDPALQICCQP
SCTPHPVCCHCPGSQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH