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Report for CCDS27941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27941.1 Public Mus musculus 16 Pmm2 23 108 98 CCDS HistoryNCBI Gene:54128Re-query CCDS DB by CCDS ID:27941.1Re-query CCDS DB by GeneID:54128See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023396.9 ENSMUSP00000023396.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023396.9Link to Ensembl Protein Viewer:ENSMUSP00000023396.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000023396Re-query CCDS DB by Protein ID:ENSMUSP00000023396
Original member Current member EBI ENSMUST00000230828.1 ENSMUSP00000155554.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230828.1Link to Ensembl Protein Viewer:ENSMUSP00000155554.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230828Re-query CCDS DB by Protein ID:ENSMUSP00000155554
Original member Current member NCBI NM_016881.3 NP_058577.1 Accepted alive Link to Nucleotide Sequence:NM_016881.3Link to Protein Sequence:NP_058577.1Re-query CCDS DB by Nucleotide ID:NM_016881Re-query CCDS DB by Protein ID:NP_058577Link to BLAST:NP_058577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058577.1 242 Q9Z2M7 242 100% 0 0

Chromosomal Locations for CCDS 27941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 8637775 8637828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8642738 8642849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8645369 8645445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8646173 8646264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8648648 8648747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8648882 8648957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8651410 8651525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8655551 8655652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGCCACTCTCTGTCTCTTCGACATGGATGGGACCCTGACTGCCCCGCGGCAGAAAATTACAGAAGAAA
TGGATGGCTTTCTACAAAAATTGAGGCAGAAGACCAAAATTGGAGTGGTAGGTGGGTCAGATTTTGAGAA
ACTGCAAGAGCAACTGGGAAATGATGTGGTTGAGAAATACGATTATGTGTTTCCAGAGAATGGCTTGGTA
GCGTACAAAGATGGGAAGCTATTGTGTAAGCAGAATATTCAAGGGCATCTGGGGGAGGATGTGATCCAAG
ACCTGATCAACTACTGTCTGAGCTACATTGCAAACATTAAACTCCCTAAGAAAAGGGGAACTTTCATTGA
ATTCCGAAATGGCATGTTGAATGTGTCCCCAATTGGAAGAAGCTGCAGCCAAGAAGAACGAATTGAATTC
TACGAACTCGATAAAAAAGAACATATACGACAAAAGTTCGTAGCAGACCTGCGGAAGGAGTTTGCAGGGA
AAGGCCTCACGTTCTCCATAGGTGGCCAAATCAGCATTGACGTCTTTCCTGAAGGATGGGATAAGCGGTA
TTGCCTGAGACACCTGGAACATGCTGGCTATAAGACCATTTATTTCTTTGGAGACAAGACTATGCCGGGT
GGCAATGACCATGAGATCTTCACAGACCCCAGAACTGTGGGCTACACAGTGACGGCCCCCGAAGACACAC
GCAGGATCTGTGAGGGGCTCTTCCCTTGA

Translation (242 aa):
MATLCLFDMDGTLTAPRQKITEEMDGFLQKLRQKTKIGVVGGSDFEKLQEQLGNDVVEKYDYVFPENGLV
AYKDGKLLCKQNIQGHLGEDVIQDLINYCLSYIANIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEF
YELDKKEHIRQKFVADLRKEFAGKGLTFSIGGQISIDVFPEGWDKRYCLRHLEHAGYKTIYFFGDKTMPG
GNDHEIFTDPRTVGYTVTAPEDTRRICEGLFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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