NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28113.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28113.2 Public Mus musculus 16 Pigx 23 108 98 CCDS HistoryNCBI Gene:72084Re-query CCDS DB by CCDS ID:28113.2Re-query CCDS DB by GeneID:72084See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 28113.1
The coding region has been updated to extend the N-terminus to an upstream CTG initiation codon which is supported by available conservation data and publications. PMID: 15635094 demonstrated use of a CTG initiation codon in rat AB177393.1, and sequence homology suggests that mouse also uses a CTG initiation codon.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 28113.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096109.10 ENSMUSP00000093819.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096109.10Link to Ensembl Protein Viewer:ENSMUSP00000093819.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096109Re-query CCDS DB by Protein ID:ENSMUSP00000093819
Original member Current member EBI ENSMUST00000215073.1 ENSMUSP00000149812.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215073.1Link to Ensembl Protein Viewer:ENSMUSP00000149812.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215073Re-query CCDS DB by Protein ID:ENSMUSP00000149812
Original member Current member NCBI NM_024464.3 NP_077784.2 Accepted alive Link to Nucleotide Sequence:NM_024464.3Link to Protein Sequence:NP_077784.2Re-query CCDS DB by Nucleotide ID:NM_024464Re-query CCDS DB by Protein ID:NP_077784Link to BLAST:NP_077784.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077784.2 254 Q99LV7-1 254 100% 0 0

Chromosomal Locations for CCDS 28113.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32084483 32084626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32085237 32085337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32087294 32087507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32092344 32092485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32097000 32097063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32099470 32099569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (765 nt):
CTGGCTGCCGGCGCTGTGGCCTGGCTGCTCCTTTGGGCAGCCTGGCTGGTCGGCAGGCTCGCCGCGGACT
TCAGCGACGCCCCTTTCAGCGCTGGTAAAGGTGTAAGGGCCACTTGTTCTGAAATTATTTTAAGGCAAGA
ATTTTTGAAAGATGGTTTCCACAGAGACCTTTTAATAAAAGTGAAATTTGGAGAGAGCATTGAGGACCTA
CAGACCTGCCGGCTCCTAATTAAGCATTACATTCCACCAGGACTCTTTGTGGATCCCTATGAGTTGGCTT
CACTACGAGAAAGGAACTTAACAGAGGCAGTGATGCTATCAGAAAGTTTTAATATAGAAGCCCCCAACTA
CTTGTCCAATGAATCTGCAGTCCTCATTTATGCCCGGCAGGATGCACAGTGCATCGACTGCTTCCAGGCC
TTTTTACCTGTGCACTATCGCTATCACCGGCCACATAAGAAAGATGGAGACACCCTCATTGTGGTCAACA
ACCCCGACTTACTGATGTACTGTGACCAAGAGTTTCCAATTTTGAAATGCTGGGCTCAGTCAGAAGTAGC
AGCTCCTTGTGCTTTGAAGAGTGAGGAGATCTGCCAGTGGAAAAGCATGCAGTACAAATCAATACTTAAG
AATTTGACAGTGCAGGTTCCAGTGGGACTGACTATACATACCTCTTTAGTGTGTTCTGTGACGCTGCTCA
TTACGATTCTGTGTTCTACTTTGATCCTTTTAGCTGTTTTCAAATATGGCCACTTTTCCCTGTAA

Translation (254 aa):
MAAGAVAWLLLWAAWLVGRLAADFSDAPFSAGKGVRATCSEIILRQEFLKDGFHRDLLIKVKFGESIEDL
QTCRLLIKHYIPPGLFVDPYELASLRERNLTEAVMLSESFNIEAPNYLSNESAVLIYARQDAQCIDCFQA
FLPVHYRYHRPHKKDGDTLIVVNNPDLLMYCDQEFPILKCWAQSEVAAPCALKSEEICQWKSMQYKSILK
NLTVQVPVGLTIHTSLVCSVTLLITILCSTLILLAVFKYGHFSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH