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Report for CCDS28348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28348.1 Public Mus musculus 16 Pigp 23 108 98 CCDS HistoryNCBI Gene:56176Re-query CCDS DB by CCDS ID:28348.1Re-query CCDS DB by GeneID:56176See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113905.7 ENSMUSP00000109538.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113905.7Link to Ensembl Protein Viewer:ENSMUSP00000109538.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113905Re-query CCDS DB by Protein ID:ENSMUSP00000109538
Original member Current member EBI ENSMUST00000113906.8 ENSMUSP00000109539.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113906.8Link to Ensembl Protein Viewer:ENSMUSP00000109539.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113906Re-query CCDS DB by Protein ID:ENSMUSP00000109539
Original member Current member EBI ENSMUST00000232294.1 ENSMUSP00000155972.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232294.1Link to Ensembl Protein Viewer:ENSMUSP00000155972.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232294Re-query CCDS DB by Protein ID:ENSMUSP00000155972
Original member Current member NCBI NM_001159616.1 NP_001153088.1 Accepted alive Link to Nucleotide Sequence:NM_001159616.1Link to Protein Sequence:NP_001153088.1Re-query CCDS DB by Nucleotide ID:NM_001159616Re-query CCDS DB by Protein ID:NP_001153088Link to BLAST:NP_001153088.1
Original member Current member NCBI NM_019543.3 NP_062416.1 Accepted alive Link to Nucleotide Sequence:NM_019543.3Link to Protein Sequence:NP_062416.1Re-query CCDS DB by Nucleotide ID:NM_019543Re-query CCDS DB by Protein ID:NP_062416Link to BLAST:NP_062416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153088.1 132 Q9JHG1 132 100% 0 0
NP_062416.1 132 Q9JHG1 132 100% 0 0

Chromosomal Locations for CCDS 28348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 94364663 94364787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94365355 94365473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94367561 94367633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94370089 94370170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGGTGGAAAATTCACCGTCGCCATTGCCAGAAAGAGCGATTTATGGCTTTGTTCTTTTCCTAAGCTCAC
AATTTGGCTTCATACTTTATCTTGTGTGGGCTTTCGTTCCCGAATCTTGGTTAAACTCCTTAGGCTTAAC
TTACTGGCCTCAAAAATACTGGGCGGTTGCATTGCCCGTCTACCTCCTTATCACAGTTGTAATTGGTTAT
GTGCTCTTATTTGGAATCAACATGATGAGTACCTCTCCACTTGACTCCATTCATACGATCACAGATAACT
ATGCTAAAAACCAACAGAGGAAAAACTACCAAGAGGATGCCATCCCAGCATTGAGAGATGTCCCCATTAG
TGAAGTAAACAAAATGTTTTTCCTAGGAGCCAAAGAACTCAATACCTAA

Translation (132 aa):
MVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFVPESWLNSLGLTYWPQKYWAVALPVYLLITVVIGY
VLLFGINMMSTSPLDSIHTITDNYAKNQQRKNYQEDAIPALRDVPISEVNKMFFLGAKELNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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