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Report for CCDS28389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28389.1 Public Mus musculus 17 Agpat4 23 108 98 CCDS HistoryNCBI Gene:68262Re-query CCDS DB by CCDS ID:28389.1Re-query CCDS DB by GeneID:68262See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024594.8 ENSMUSP00000024594.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024594.8Link to Ensembl Protein Viewer:ENSMUSP00000024594.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000024594Re-query CCDS DB by Protein ID:ENSMUSP00000024594
Original member Current member NCBI NM_026644.2 NP_080920.2 Accepted alive Link to Nucleotide Sequence:NM_026644.2Link to Protein Sequence:NP_080920.2Re-query CCDS DB by Nucleotide ID:NM_026644Re-query CCDS DB by Protein ID:NP_080920Link to BLAST:NP_080920.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080920.2 378 Q8K4X7 378 100% 0 0

Chromosomal Locations for CCDS 28389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12151772 12151949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12198752 12198921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12210211 12210372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12210639 12210792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12213455 12213557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12215276 12215351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12216694 12216892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12218985 12219079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGGACCTCATCGGGCTGCTGAAGTCCCAGTTTCTATGTCACCTGGTCTTCTGCTACGTGTTCATCGCCT
CGGGGCTCATTGTCAACGCCATCCAGCTGTGCACGCTGGTCATCTGGCCCATCAACAAGCAGCTGTTCCG
CAAGATCAATGCCAGACTCTGCTACTGCGTCTCCAGCCAGTTGGTGATGCTTCTGGAGTGGTGGTCGGGC
ACGGAGTGTACCATCTACACCGACCCGAAGGCCTGCCCCCACTACGGGAAGGAAAACGCCATCGTGGTCC
TCAATCACAAGTTTGAGATTGACTTTCTCTGTGGCTGGAGCCTGGCTGAGCGCCTGGGGATCCTGGGGAA
CTCCAAAGTCCTGGCCAAGAAAGAACTGGCTTATGTCCCAATCATTGGCTGGATGTGGTACTTCGTGGAA
ATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACCTCCGGG
ACTACCCAGAGAAGTATCTGTTCCTGATCCACTGTGAGGGCACACGGTTCACAGAGAAGAAACACCAAAT
CAGCATGCAGGTGGCCCAAGCCAAGGGGCTGCCCAGCCTCAAACACCACCTGCTGCCGCGCACCAAAGGC
TTTGCTATTACTGTGAAGTGCTTGCGAGATGTTGTCCCAGCTGTATATGACTGTACACTCAATTTCAGAA
ACAATGAAAACCCAACACTGCTGGGAGTCTTAAATGGAAAGAAATATCACGCTGACTGCTACGTTCGGAG
GATCCCCATGGAGGACATTCCGGAGGATGAGGACAAGTGCTCTGCCTGGTTACACAAGCTCTACCAGGAG
AAGGATGCCTTTCAGGAGGAATACTACAGGACAGGGGTCTTCCCAGAGACTCCCTGGGTTCCCCCACGGC
GGCCCTGGTCTCTGGTCAACTGGTTGTTCTGGGCATCGCTGCTGCTCTACCCTTTCTTCCAGTTCCTAGT
TAGCATGGTCAGCAGCGGTTCCTCGGTGACGCTGGCCAGCTTGGTCCTCATCTTCTGTATGGCCTCCATG
GGAGTTCGATGGATGATTGGCGTGACAGAAATCGACAAGGGCTCTGCCTACGGCAACATCGACAACAAAC
GGAAACAAACGGACTGA

Translation (378 aa):
MDLIGLLKSQFLCHLVFCYVFIASGLIVNAIQLCTLVIWPINKQLFRKINARLCYCVSSQLVMLLEWWSG
TECTIYTDPKACPHYGKENAIVVLNHKFEIDFLCGWSLAERLGILGNSKVLAKKELAYVPIIGWMWYFVE
MIFCTRKWEQDRQTVAKSLLHLRDYPEKYLFLIHCEGTRFTEKKHQISMQVAQAKGLPSLKHHLLPRTKG
FAITVKCLRDVVPAVYDCTLNFRNNENPTLLGVLNGKKYHADCYVRRIPMEDIPEDEDKCSAWLHKLYQE
KDAFQEEYYRTGVFPETPWVPPRRPWSLVNWLFWASLLLYPFFQFLVSMVSSGSSVTLASLVLIFCMASM
GVRWMIGVTEIDKGSAYGNIDNKRKQTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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